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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE407
Library SL
(Link to library)
Clone ID SLE407
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09973-1
Original site URL
Representative seq. ID SLE407E
(Link to Original site)
Representative DNA sequence 
>SLE407 (SLE407Q) /CSM/SL/SLE4-A/SLE407Q.Seq.d/
AGTTAATTAAACTTCATATTTTTGTAGTATTATCAAGATTTAGATATTATTTCGGATGGT
ATATGTCAGAAGGTAGTGCAGTATTATCAGGTATTGGATTTAATGGATTTGAAAAGGATG
GTGTAACAATGAAATGGGATCGTATTACCAATGTTTATCCATTAAGTGTTGAGTTGGCAA
GTAATGTAAGAGACGTTTCAAACAATTGGAATATTGGTACTAGCGATTGGTTAAAGAGAT
ACGTTTACCTTCGTTTAACACCAGCAGGTGCCAAACCAACCTTTTTCGCAACACTTGCAA
CCTATACCATCTCTGCATTCTGGCATGGTTTCTATCCAGGTTATTACATTTTCTTTGTCG
CCTGTACATTACTCACAGAGGTTGCCAAAGATATGCGTCGTAAGATTCGTCCATATTTCG
TCAAACAAAATGGTGACGTTGCAATCCAAACTCCATTGAAAACAGTTTACGATATCGTTG
GTTCAATTTGTTGTGTTTGGTGGTTATCCTTCTTTGGTGCTTCTTTCATCTTTTTAAATA
TTGAACGTTCAATTCATCTTTGGAATACTTTTTCTTATATTCCAATCATCATCTTATTCG
TTACTTTTATTTTATTAAGATTTGTTCTTCCAACTCCAAGATCAACTCCAAGACCAACAA
AAAAAACTAATTAAAATAAAAAAAATAAAAATTAAAATAAAAAATAAATTATTTA
sequence update 1999. 7.16
Translated Amino Acid sequence 
LIKLHIFVVLSRFRYYFGWYMSEGSAVLSGIGFNGFEKDGVTMKWDRITNVYPLSVELAS
NVRDVSNNWNIGTSDWLKRYVYLRLTPAGAKPTFFATLATYTISAFWHGFYPGYYIFFVA
CTLLTEVAKDMRRKIRPYFVKQNGDVAIQTPLKTVYDIVGSICCVWWLSFFGASFIFLNI
ERSIHLWNTFSYIPIIILFVTFILLRFVLPTPRSTPRPTKKTN*nkknkn*nkk*ii
Translated Amino Acid sequence (All Frames) 
Frame A:
s*lnfifl*yyqdldiisdgicqkvvqyyqvldlmdlkrmv*q*ngivlpmfih*vlswq
vm*etfqtigilvlaig*rdtftfv*hqqvpnqpfsqhlqpipslhsgmvsiqvitfsls
pvhysqrlpkicvvrfvhissnkmvtlqsklh*kqftislvqfvvfggypslvllssf*i
lnvqfifgilflifqsssyslllfy*dlffqlqdqlqdqqkklikikkikikiknklf


Frame B:
vn*tsyfcsiiki*ilfrmvyvrr*csiirywi*wi*kgwcnnemgsyyqclsikc*vgk
*ckrrfkqleywy*rlvkeirlpsfntsrcqtnlfrntcnlyhlcilawflsrllhflcr
lyithrgcqryas*dssifrqtkw*rcnpnsienslryrwfnllclvvillwcffhlfky
*tfnssleyfflysnhhliryfyfikicssnskinsktnkkn*lk*kk*klk*kinyl


Frame C:
LIKLHIFVVLSRFRYYFGWYMSEGSAVLSGIGFNGFEKDGVTMKWDRITNVYPLSVELAS
NVRDVSNNWNIGTSDWLKRYVYLRLTPAGAKPTFFATLATYTISAFWHGFYPGYYIFFVA
CTLLTEVAKDMRRKIRPYFVKQNGDVAIQTPLKTVYDIVGSICCVWWLSFFGASFIFLNI
ERSIHLWNTFSYIPIIILFVTFILLRFVLPTPRSTPRPTKKTN*nkknkn*nkk*ii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN259 (VFN259Q) /CSM/VF/VFN2-C/VFN259Q.Seq.d/                       1304   0.0
VFC641 (VFC641Q) /CSM/VF/VFC6-B/VFC641Q.Seq.d/                       1304   0.0
SLE407 (SLE407Q) /CSM/SL/SLE4-A/SLE407Q.Seq.d/                       1304   0.0
SFC679 (SFC679Q) /CSM/SF/SFC6-D/SFC679Q.Seq.d/                       1304   0.0
AFG336 (AFG336Q) /CSM/AF/AFG3-B/AFG336Q.Seq.d/                       1304   0.0
VFE252 (VFE252Q) /CSM/VF/VFE2-C/VFE252Q.Seq.d/                       1298   0.0
VFN149 (VFN149Q) /CSM/VF/VFN1-C/VFN149Q.Seq.d/                       1296   0.0
VFN121 (VFN121Q) /CSM/VF/VFN1-A/VFN121Q.Seq.d/                       1296   0.0
VFI145 (VFI145Q) /CSM/VF/VFI1-B/VFI145Q.Seq.d/                       1296   0.0
VFD417 (VFD417Q) /CSM/VF/VFD4-A/VFD417Q.Seq.d/                       1296   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ435571) Dictyostelium discoideum cDNA clone:ddv27e16, 3' ...  1304   0.0    1
(BJ430148) Dictyostelium discoideum cDNA clone:ddv6a12, 3' e...  1304   0.0    1
(BJ399665) Dictyostelium discoideum cDNA clone:dds6m20, 3' e...  1304   0.0    1
(BJ342297) Dictyostelium discoideum cDNA clone:dda13h09, 3' ...  1304   0.0    1
(BJ431012) Dictyostelium discoideum cDNA clone:ddv9g14, 3' e...  1298   0.0    1
(BJ435547) Dictyostelium discoideum cDNA clone:ddv27a13, 3' ...  1296   0.0    1
(BJ435434) Dictyostelium discoideum cDNA clone:ddv27i05, 3' ...  1296   0.0    1
(BJ432021) Dictyostelium discoideum cDNA clone:ddv17i11, 3' ...  1296   0.0    1
(BJ430365) Dictyostelium discoideum cDNA clone:ddv7b06, 3' e...  1296   0.0    1
(AU034958) Dictyostelium discoideum slug cDNA, clone SLE407.     1225   0.0    1
dna update 2009. 4. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FB837117_1(FB837117|pid:none) Sequence 56390 from Patent WO20080...   177   3e-43
FB837119_1(FB837119|pid:none) Sequence 56392 from Patent WO20080...   172   7e-42
(O42916) RecName: Full=Lysophospholipid acyltransferase;        ...   169   1e-40
CU633900_288(CU633900|pid:none) Podospora anserina genomic DNA c...   168   2e-40
AM920427_419(AM920427|pid:none) Penicillium chrysogenum Wisconsi...   161   2e-38
(Q08548) RecName: Full=Lysophospholipid acyltransferase;        ...   159   1e-37
AE016820_640(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...   159   1e-37
U55021_13(U55021|pid:none) Saccharomyces cerevisiae cosmid pUOA1...   159   1e-37
CR382132_814(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...   154   3e-36
FB837129_1(FB837129|pid:none) Sequence 56402 from Patent WO20080...   150   3e-35
protein update 2009. 7. 5
PSORT 

 psg: 0.91  gvh: 0.40  alm: 0.16  top: 0.63  tms: 0.13  mit: 0.34  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 20.0 %: plasma membrane
	 12.0 %: mitochondrial
	 12.0 %: vacuolar
	 12.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SLE407 is end
5' end seq. ID SLE407F
5' end seq. 
>SLE407F.Seq
AGTTAATTAAACTTCATATTTTTGTAGTATTATCAAGATTTAGATATTATTTCGGATGGT
ATATGTCAGAAGGTAGTGCAGTATTATCAGGTATTGGATTTAATGGATTTGAAAAGGATG
GTGTAACAATGAAATGGGATCGTATTACCAATGTTTATCCATTAAGTGTTGAGTTGGCAA
GTAATGTAAGAGACGTTTCAAACAATTGGAATATTGGTACTAGCGATTGGTTAAAGAGAT
ACGTTTACCTTCGTTTAACACCAGCAGGTGCCAAACCAACCTTTTTCGCAACACTTGCAA
CCTATACCATCTCTGCATTCTGGCATGGTTTCTATCCAGGTTATTACATTTTCTTTGTCG
CCTGTACATTACTCACAGAGGTTGCCAAAGATATGCGTCGTAAGATTCGTCCATATTTCG
TCAAACAAAATGGTGACGTTGCAATCCAAACTCCATTGAAAACAGTTTACGATATCGTTG
GTTCAATTTGTTGTGTTTGGTGGTTATCCTTCTTTGGTGCTTCTTTCATCTTTTTAAATA
TTGAACGTTCAATTCATCTTTGGAATACTTTTTCTTATATTCCAATCATCATCTTATTCG
TTACTTT----------
Length of 5' end seq. 607
3' end seq. ID SLE407Z
3' end seq. 
>SLE407Z.Seq
----------TAGATATTATTTCGGATGGTATATGTCAGAAGGTAGTGCAGTATTATCAG
GTATTGGATTTAATGGATTTGAAAAGGATGGTGTAACAATGAAATGGGATCGTATTACCA
ATGTTTATCCATTAAGTGTTGAGTTGGCAAGTAATGTAAGAGACGTTTCAAACAATTGGA
ATATTGGTACTAGCGATTGGTTAAAGAGATACGTTTACCTTCGTTTAACACCAGCAGGTG
CCAAACCAACCTTTTTCGCAACACTTGCAACCTATACCATCTCTGCATTCTGGCATGGTT
TCTATCCAGGTTATTACATTTTCTTTGTCGCCTGTACATTACTCACAGAGGTTGCCAAAG
ATATGCGTCGTAAGATTCGTCCATATTTCGTCAAACAAAATGGTGACGTTGCAATCCAAA
CTCCATTGAAAACAGTTTACGATATCGTTGGTTCAATTTGTTGTGTTTGGTGGTTATCCT
TCTTTGGTGCTTCTTTCATCTTTTTAAATATTGAACGTTCAATTCATCTTTGGAATACTT
TTTCTTATATTCCAATCATCATCTTATTCGTTACTTTTATTTTATTAAGATTTGTTCTTC
CAACTCCAAGATCAACTCCAAGACCAACAAAAAAAACTAATTAAAATAAAAAAAATAAAA
ATTAAAATAAAAAATAAATTATTTA
Length of 3' end seq. 675
Connected seq. ID SLE407P
Connected seq. 
>SLE407P.Seq
AGTTAATTAAACTTCATATTTTTGTAGTATTATCAAGATTTAGATATTATTTCGGATGGT
ATATGTCAGAAGGTAGTGCAGTATTATCAGGTATTGGATTTAATGGATTTGAAAAGGATG
GTGTAACAATGAAATGGGATCGTATTACCAATGTTTATCCATTAAGTGTTGAGTTGGCAA
GTAATGTAAGAGACGTTTCAAACAATTGGAATATTGGTACTAGCGATTGGTTAAAGAGAT
ACGTTTACCTTCGTTTAACACCAGCAGGTGCCAAACCAACCTTTTTCGCAACACTTGCAA
CCTATACCATCTCTGCATTCTGGCATGGTTTCTATCCAGGTTATTACATTTTCTTTGTCG
CCTGTACATTACTCACAGAGGTTGCCAAAGATATGCGTCGTAAGATTCGTCCATATTTCG
TCAAACAAAATGGTGACGTTGCAATCCAAACTCCATTGAAAACAGTTTACGATATCGTTG
GTTCAATTTGTTGTGTTTGGTGGTTATCCTTCTTTGGTGCTTCTTTCATCTTTTTAAATA
TTGAACGTTCAATTCATCTTTGGAATACTTTTTCTTATATTCCAATCATCATCTTATTCG
TTACTTT----------TAGATATTATTTCGGATGGTATATGTCAGAAGGTAGTGCAGTA
TTATCAGGTATTGGATTTAATGGATTTGAAAAGGATGGTGTAACAATGAAATGGGATCGT
ATTACCAATGTTTATCCATTAAGTGTTGAGTTGGCAAGTAATGTAAGAGACGTTTCAAAC
AATTGGAATATTGGTACTAGCGATTGGTTAAAGAGATACGTTTACCTTCGTTTAACACCA
GCAGGTGCCAAACCAACCTTTTTCGCAACACTTGCAACCTATACCATCTCTGCATTCTGG
CATGGTTTCTATCCAGGTTATTACATTTTCTTTGTCGCCTGTACATTACTCACAGAGGTT
GCCAAAGATATGCGTCGTAAGATTCGTCCATATTTCGTCAAACAAAATGGTGACGTTGCA
ATCCAAACTCCATTGAAAACAGTTTACGATATCGTTGGTTCAATTTGTTGTGTTTGGTGG
TTATCCTTCTTTGGTGCTTCTTTCATCTTTTTAAATATTGAACGTTCAATTCATCTTTGG
AATACTTTTTCTTATATTCCAATCATCATCTTATTCGTTACTTTTATTTTATTAAGATTT
GTTCTTCCAACTCCAAGATCAACTCCAAGACCAACAAAAAAAACTAATTAAAATAAAAAA
AATAAAAATTAAAATAAAAAATAAATTATTTA
Length of connected seq. 1282
Full length Seq ID SLE407E
Full length Seq. 
>SLE407E.Seq
AGTTAATTAAACTTCATATTTTTGTAGTATTATCAAGATTTAGATATTATTTCGGATGGT
ATATGTCAGAAGGTAGTGCAGTATTATCAGGTATTGGATTTAATGGATTTGAAAAGGATG
GTGTAACAATGAAATGGGATCGTATTACCAATGTTTATCCATTAAGTGTTGAGTTGGCAA
GTAATGTAAGAGACGTTTCAAACAATTGGAATATTGGTACTAGCGATTGGTTAAAGAGAT
ACGTTTACCTTCGTTTAACACCAGCAGGTGCCAAACCAACCTTTTTCGCAACACTTGCAA
CCTATACCATCTCTGCATTCTGGCATGGTTTCTATCCAGGTTATTACATTTTCTTTGTCG
CCTGTACATTACTCACAGAGGTTGCCAAAGATATGCGTCGTAAGATTCGTCCATATTTCG
TCAAACAAAATGGTGACGTTGCAATCCAAACTCCATTGAAAACAGTTTACGATATCGTTG
GTTCAATTTGTTGTGTTTGGTGGTTATCCTTCTTTGGTGCTTCTTTCATCTTTTTAAATA
TTGAACGTTCAATTCATCTTTGGAATACTTTTTCTTATATTCCAATCATCATCTTATTCG
TTACTTTTATTTTATTAAGATTTGTTCTTCCAACTCCAAGATCAACTCCAAGACCAACAA
AAAAAACTAATTAAAATAAAAAAAATAAAAATTAAAATAAAAAATAAATTATTTA
Length of full length seq. 715