NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE380
Library SL
(Link to library)
Clone ID SLE380
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLE380Z
(Link to Original site)
Representative DNA sequence 
>SLE380 (SLE380Q) /CSM/SL/SLE3-D/SLE380Q.Seq.d/
XXXXXXXXXXTCTCCCACACTGTACCAATCTATGAAGGTTATGCCTTACCACATGCCATC
TTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAA
CGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAA
TTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCC
CTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTC
CGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCAC
GAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGT
AATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAA
GAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGT
AAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATG
TGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTC
TAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAAAAAAAAA
sequence update 1998. 5.22
Translated Amino Acid sequence 
---SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKL
AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE
TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERK
YSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnlkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---lphctnl*rlclttchltfrfsws*sy*lhdenln*twllihhhc*krnrqryqrki
slrrprl*s*nanccliisprkiiritrrsshhhr**tfplprsplptiilrygiswypr
nhlqlhhem*c*yp*rfir*crliwwynyvpryc*syeqrincfspinhen*nhcstrt*
ilcldwwiylsftlnfptnvdlqrri*rirsincpqkmflnn**iccilfklkkk


Frame B:
---SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKL
AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE
TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERK
YSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tinkyvvfylnlkkk


Frame C:
---ptlyqsmkvmpyhmpsyv*i*lvvillit**ks*lnvvthsppllkeksseiskkn*
ptspstlklkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnqlvstk
ppttps*nvmlisvkiytvmssylvvqlcsqvlliv*tkn*ll*phqp*klksllhqnvn
tlsglvdls*lhsqlsnkcgspkknmtnqvhqlstenvskqlinmlyfi*t*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH788 (SLH788Q) /CSM/SL/SLH7-D/SLH788Q.Seq.d/                       1364   0.0
SLH781 (SLH781Q) /CSM/SL/SLH7-D/SLH781Q.Seq.d/                       1364   0.0
SLG170 (SLG170Q) /CSM/SL/SLG1-C/SLG170Q.Seq.d/                       1364   0.0
SLE508 (SLE508Q) /CSM/SL/SLE5-A/SLE508Q.Seq.d/                       1364   0.0
SLE450 (SLE450Q) /CSM/SL/SLE4-C/SLE450Q.Seq.d/                       1364   0.0
SLE380 (SLE380Q) /CSM/SL/SLE3-D/SLE380Q.Seq.d/                       1364   0.0
SLB729 (SLB729Q) /CSM/SL/SLB7-B/SLB729Q.Seq.d/                       1364   0.0
SLB707 (SLB707Q) /CSM/SL/SLB7-A/SLB707Q.Seq.d/                       1364   0.0
SLB156 (SLB156Q) /CSM/SL/SLB1-C/SLB156Q.Seq.d/                       1364   0.0
VFI535 (VFI535Q) /CSM/VF/VFI5-B/VFI535Q.Seq.d/                       1360   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU039680) Dictyostelium discoideum slug cDNA, clone SLG170.     1364   0.0    1
(AU039439) Dictyostelium discoideum slug cDNA, clone SLH788.     1364   0.0    1
(AU039434) Dictyostelium discoideum slug cDNA, clone SLH781.     1364   0.0    1
(AU035022) Dictyostelium discoideum slug cDNA, clone SLE508.     1364   0.0    1
(AU034988) Dictyostelium discoideum slug cDNA, clone SLE450.     1364   0.0    1
(AU034946) Dictyostelium discoideum slug cDNA, clone SLE380.     1364   0.0    1
(AU034089) Dictyostelium discoideum slug cDNA, clone SLB729.     1364   0.0    1
(AU033993) Dictyostelium discoideum slug cDNA, clone SLB707.     1364   0.0    1
(AU033549) Dictyostelium discoideum slug cDNA, clone SLB156.     1364   0.0    1
(BJ432302) Dictyostelium discoideum cDNA clone:ddv18e09, 3' ...  1360   0.0    1
dna update 2009. 3.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   433   e-120
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   433   e-120
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        433   e-120
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   429   e-119
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   429   e-119
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   427   e-118
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   426   e-118
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          425   e-118
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   422   e-117
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   421   e-116
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLE380 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE380Z
3' end seq. 
>SLE380Z.Seq
----------TCTCCCACACTGTACCAATCTATGAAGGTTATGCCTTACCACATGCCATC
TTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAA
CGTGGTTACTCATTCACCACCACTGCTGAAAGAGAAATCGTCAGAGATATCAAAGAAAAA
TTAGCCTACGTCGCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCC
CTCGAAAAATCATACGAATTACCAGACGGTCAAGTCATCACCATCGGTAATGAACGTTTC
CGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCAC
GAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGT
AATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAA
GAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGT
AAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATG
TGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTC
TAAACAATTAATAAATATGTTGTATTTTATTTAAACTTAAAAAAAAAA
Length of 3' end seq. 698
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -