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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE369
Library SL
(Link to library)
Clone ID SLE369
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16580-1
Original site URL
Representative seq. ID SLE369E
(Link to Original site)
Representative DNA sequence 
>SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/
GTCAAAGTGAAGAGATTCAACCTAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTT
AAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATCAATGAGATTC
CCACTGTCCCTAACTACTATACAGCGAAACCACTGCAAGGGGAACGGGCCTTGCAAAAAC
AGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGATATTGCATAGTGACCTAAA
AGGTGTAGAATAGGTGGGAGGGGCAACCCGACGGTGAAATACCACCCCTTTTGGCGTTAC
TTTGCTAACTTGGAATAACAGTACCTCATAATTCATTTTATGATGGTTTTGGTGAATAAG
CGGATCAACCACGGGTGAAATCTGTGCAAATTGGGCAACTGATTTGTATAGCAAAGTAGT
CCCTCTGGTCCCGTATTATGTCGACCAAGAACAGTTTCAGGTGGGGAGTTTGGCTGGGGC
GGCACATTTGTTAAAAGATAACGCAAGTGTCCAAAGGCAGGCTCAGTGAGAACAGAAATC
TCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACT
GGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAA
AAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTT
GATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTG
TTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTA
CCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCA
TGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGT
TGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTT
TAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAA
ACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTA
AATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAA
CTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAG
TTCTTTCTTGTAA
sequence update 1999. 6.18
Translated Amino Acid sequence 
sk*rdst*hg*tagvtmtllr*pnasssn**ra*mdq*dshcp*llysettargtglakt
agkedpveldsslilhsdlkgve*vggatrr*nttpfgvtlltwnnsts*fil*wfw*IS
GSTTGEICANWATDLYSKVVPLVPYYVDQEQFQVGSLAGAAHLLKDNASVQRQAQ*eqks
hve*kgkslldsdfqy*selgnqglsilyvlks*a*rcqksyhrdnwlvaakrs*rrcfl
ilrcrlflsl*srihkvldcsptnkerelgldrretg*fyptvvnclrnssmi*yernch
agslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*vtlgcwwgttfnfk
pyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn*vl*ase*rsvtrg*gfsis
sfl*
Translated Amino Acid sequence (All Frames) 
Frame A:
vkvkrfnlarvnggsnydslkvakclvi*lvtrmngsmrfplslttiqrnhckgngpckn
sgerrpc*a*l*sdia**pkrcriggrgnptvkyhpfwryfanle*qyliihfmmvlvnk
rinhg*nlcklgn*fv*qsspsgpvlcrprtvsggefgwggtfvkr*rkcpkagsvrtei
srrvkgqkpa*f*fsvligtgkpgpidplca*ilslevseklpqg*lacgsqaliatllf
dpsmsalliivkqnsqsvglfth*qgt*agfrps*drlvlpyccqlfa***hdlvreels
critgl*vyltk**paatirwimaerl*vrihsrnanqml*svnvvgnirllvgdhfql*
ti*liavtlqfpsgycggwlnsnlyprsaqlfdcrrlsnelgavsfrvafsyeglrlfh*
fflv


Frame B:
sk*rdst*hg*tagvtmtllr*pnasssn**ra*mdq*dshcp*llysettargtglakt
agkedpveldsslilhsdlkgve*vggatrr*nttpfgvtlltwnnsts*fil*wfw*IS
GSTTGEICANWATDLYSKVVPLVPYYVDQEQFQVGSLAGAAHLLKDNASVQRQAQ*eqks
hve*kgkslldsdfqy*selgnqglsilyvlks*a*rcqksyhrdnwlvaakrs*rrcfl
ilrcrlflsl*srihkvldcsptnkerelgldrretg*fyptvvnclrnssmi*yernch
agslvcrfi*qnsdlplpsvg*wlnasksesiletqtkcfrv*ml*vtlgcwwgttfnfk
pyd*sllhcsflpvivvgg*iliyilvplnssivddyqmn*vl*ase*rsvtrg*gfsis
sfl*


Frame C:
qseeiqpstgkrre*l*ls*gsqmprhlisdahewineiptvpnyytakplqgeralqkq
rgkktllsltlv*ycivt*kv*nrwegqpdgeippllallc*lgitvphnsfydgfge*a
dqprvksvqigqliciak*slwsrimstknsfrwgvwlgrhic*kitqvskgrlsenrnl
t*skrakaclilifstnrnwetrayrsfmclnlkprgvrkvttgitglwqpsahsdaaf*
sfdvgssyhceaeftkcwivhpltrnvswv*tvvrqvsftlllsivcviva*fstrgtvm
pdhwsvglfdkivtcryhpldng*tplsqnpf*krkpnalececcr*h*vvgggplstln
hminrcytavsfrllwwvakf*fissfrstlrl*ttik*trccklpssvqlrgveafplv
lsc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE369 (SLE369Q) /CSM/SL/SLE3-C/SLE369Q.Seq.d/                       2524   0.0
VHA301 (VHA301Q) /CSM/VH/VHA3-A/VHA301Q.Seq.d/                       1532   0.0
VHK648 (VHK648Q) /CSM/VH/VHK6-B/VHK648Q.Seq.d/                       1524   0.0
VHD592 (VHD592Q) /CSM/VH/VHD5-D/VHD592Q.Seq.d/                       1522   0.0
VHD131 (VHD131Q) /CSM/VH/VHD1-B/VHD131Q.Seq.d/                       1520   0.0
CHI557 (CHI557Q) /CSM/CH/CHI5-C/CHI557Q.Seq.d/                       1511   0.0
SHA880 (SHA880Q) /CSM/SH/SHA8-D/SHA880Q.Seq.d/                       1507   0.0
VHK846 (VHK846Q) /CSM/VH/VHK8-B/VHK846Q.Seq.d/                       1501   0.0
VHK190 (VHK190Q) /CSM/VH/VHK1-D/VHK190Q.Seq.d/                       1497   0.0
CHL604 (CHL604Q) /CSM/CH/CHL6-A/CHL604Q.Seq.d/                       1497   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY171066) Dictyostelium discoideum extrachromosomal palindr...  2524   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1742   0.0    2
(BJ436379) Dictyostelium discoideum cDNA clone:ddv31b01, 3' ...  1532   0.0    1
(BJ443278) Dictyostelium discoideum cDNA clone:ddv52o12, 3' ...  1522   0.0    1
(BJ446830) Dictyostelium discoideum cDNA clone:ddv63p24, 3' ...  1501   0.0    1
(BJ443056) Dictyostelium discoideum cDNA clone:ddv51c23, 3' ...  1497   0.0    1
(BJ382539) Dictyostelium discoideum cDNA clone:ddc45g02, 3' ...  1497   0.0    1
(BJ438598) Dictyostelium discoideum cDNA clone:ddv37m07, 3' ...  1469   0.0    2
(BJ443023) Dictyostelium discoideum cDNA clone:ddv51m16, 3' ...  1465   0.0    1
(BJ405182) Dictyostelium discoideum cDNA clone:dds30i20, 3' ...  1465   0.0    1
dna update 2009. 3.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK230153_1(AK230153|pid:none) Arabidopsis thaliana mRNA for hypo...   147   8e-34
EU430725_1(EU430725|pid:none) Cupressus sempervirens clone CYPLP...   140   1e-31
AY436773_1(AY436773|pid:none) Pyrus communis putative senescence...   124   7e-27
CP001575_406(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   123   2e-26
AL844507_287(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    97   1e-18
EF676655_1(EF676655|pid:none) Picea sitchensis clone WS02746_H02...    89   4e-16
EF192058_1(EF192058|pid:none) Trichosanthes dioica clone TDM04 p...    86   2e-15
EU958272_1(EU958272|pid:none) Zea mays clone 1682540 hypothetica...    86   4e-15
BC142849_1(BC142849|pid:none) Danio rerio zgc:165536, mRNA (cDNA...    85   5e-15
AL844509_689(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    84   8e-15
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLE369 is cyt
5' end seq. ID SLE369F
5' end seq. 
>SLE369F.Seq
GTCAAAGTGAAGAGATTCAACCTAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTT
AAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATCAATGAGATTC
CCACTGTCCCTAACTACTATACAGCGAAACCACTGCAAGGGGAACGGGCCTTGCAAAAAC
AGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGATATTGCATAGTGACCTAAA
AGGTGTAGAATAGGTGGGAGGGGCAACCCGACGGTGAAATACCACCCCTTTTGGCGTTAC
TTTGCTAACTTGGAATAACAGTACCTCATAATTCATTTTATGATGGTTTTGGTGAATAAG
CGGATCAACCACGGGTGAAATCTGTGCAAATTGGGCAACTGATTTGTATAGCAAAGTAGT
CCCTCTGGTCCCGTATTATGTCGACCAAGAACAGTTTCAGGTGGGGAGTTTGGCTGGGGC
GGCACATTTGTTAAAAGATAACGCAAGTGTCCAAAGGCAGGCTCAGTGAGAACAGAAATC
TCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACT
GGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAA
A----------
Length of 5' end seq. 661
3' end seq. ID SLE369Z
3' end seq. 
>SLE369Z.Seq
----------CAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGCT
TAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGC
CAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGTG
AAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTTT
AGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTAG
CATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGACA
AAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAATC
CATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTTG
TTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTTT
CCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACTC
TTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGT
TACGAGGGGTTGAGGCTTTTCCATTAGTTCTTTCTTGTAA
Length of 3' end seq. 690
Connected seq. ID SLE369P
Connected seq. 
>SLE369P.Seq
GTCAAAGTGAAGAGATTCAACCTAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTT
AAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATCAATGAGATTC
CCACTGTCCCTAACTACTATACAGCGAAACCACTGCAAGGGGAACGGGCCTTGCAAAAAC
AGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGATATTGCATAGTGACCTAAA
AGGTGTAGAATAGGTGGGAGGGGCAACCCGACGGTGAAATACCACCCCTTTTGGCGTTAC
TTTGCTAACTTGGAATAACAGTACCTCATAATTCATTTTATGATGGTTTTGGTGAATAAG
CGGATCAACCACGGGTGAAATCTGTGCAAATTGGGCAACTGATTTGTATAGCAAAGTAGT
CCCTCTGGTCCCGTATTATGTCGACCAAGAACAGTTTCAGGTGGGGAGTTTGGCTGGGGC
GGCACATTTGTTAAAAGATAACGCAAGTGTCCAAAGGCAGGCTCAGTGAGAACAGAAATC
TCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACT
GGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAA
A----------CAGTACTAATCGGAACTGGGAAACCAGGGCCTATCGATCCTTTATGTGC
TTAAATCTTAAGCCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAG
CCAAGCGCTCATAGCGACGCTGCTTTTTGATCCTTCGATGTCGGCTCTTCTTATCATTGT
GAAGCAGAATTCACAAAGTGTTGGATTGTTCACCCACTAACAAGGAACGTGAGCTGGGTT
TAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGTTGTCAATTGTTTGCGTAATAGTA
GCATGATTTAGTACGAGAGGAACTGTCATGCCGGATCACTGGTCTGTAGGTTTATTTGAC
AAAATAGTGACCTGCCGCTACCATCCGTTGGATAATGGCTGAACGCCTCTAAGTCAGAAT
CCATTCTAGAAACGCAAACCAAATGCTTTAGAGTGTGAATGTTGTAGGTAACATTAGGTT
GTTGGTGGGGGACCACTTTCAACTTTAAACCATATGATTAATCGCTGTTACACTGCAGTT
TCCTTCCGGTTATTGTGGTGGGTGGCTAAATTCTAATTTATATCCTCGTTCCGCTCAACT
CTTCGATTGTAGACGACTATCAAATGAACTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAG
TTACGAGGGGTTGAGGCTTTTCCATTAGTTCTTTCTTGTAA
Length of connected seq. 1351
Full length Seq ID SLE369E
Full length Seq. 
>SLE369E.Seq
GTCAAAGTGAAGAGATTCAACCTAGCACGGGTAAACGGCGGGAGTAACTATGACTCTCTT
AAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATCAATGAGATTC
CCACTGTCCCTAACTACTATACAGCGAAACCACTGCAAGGGGAACGGGCCTTGCAAAAAC
AGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCTGATATTGCATAGTGACCTAAA
AGGTGTAGAATAGGTGGGAGGGGCAACCCGACGGTGAAATACCACCCCTTTTGGCGTTAC
TTTGCTAACTTGGAATAACAGTACCTCATAATTCATTTTATGATGGTTTTGGTGAATAAG
CGGATCAACCACGGGTGAAATCTGTGCAAATTGGGCAACTGATTTGTATAGCAAAGTAGT
CCCTCTGGTCCCGTATTATGTCGACCAAGAACAGTTTCAGGTGGGGAGTTTGGCTGGGGC
GGCACATTTGTTAAAAGATAACGCAAGTGTCCAAAGGCAGGCTCAGTGAGAACAGAAATC
TCACGTAGAGTAAAAGGGCAAAAGCCTGCTTGATTCTGATTTTCAGTACTAATCGGAACT
GGGAAACCAGGGCCTATCGATCCTTTATGTGCTTAAATCTTAAGCCTAGAGGTGTCAGAA
AAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGCTCATAGCGACGCTGCTTTTT
GATCCTTCGATGTCGGCTCTTCTTATCATTGTGAAGCAGAATTCACAAAGTGTTGGATTG
TTCACCCACTAACAAGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTA
CCCTACTGTTGTCAATTGTTTGCGTAATAGTAGCATGATTTAGTACGAGAGGAACTGTCA
TGCCGGATCACTGGTCTGTAGGTTTATTTGACAAAATAGTGACCTGCCGCTACCATCCGT
TGGATAATGGCTGAACGCCTCTAAGTCAGAATCCATTCTAGAAACGCAAACCAAATGCTT
TAGAGTGTGAATGTTGTAGGTAACATTAGGTTGTTGGTGGGGGACCACTTTCAACTTTAA
ACCATATGATTAATCGCTGTTACACTGCAGTTTCCTTCCGGTTATTGTGGTGGGTGGCTA
AATTCTAATTTATATCCTCGTTCCGCTCAACTCTTCGATTGTAGACGACTATCAAATGAA
CTAGGTGCTGTAAGCTTCCGAGTAGCGTTCAGTTACGAGGGGTTGAGGCTTTTCCATTAG
TTCTTTCTTGTAA
Length of full length seq. 1273