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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE367
Library SL
(Link to library)
Clone ID SLE367
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16462-1
Original site URL
Representative seq. ID SLE367P
(Link to Original site)
Representative DNA sequence 
>SLE367 (SLE367Q) /CSM/SL/SLE3-C/SLE367Q.Seq.d/
CCCCTTTTAATATATTTTATATTTTCAAAAAATAAATAAATAAACAAATAAATAAACAAA
TAAATAAACAAACAAATTAATATTAATATTAATAATGAATCCATTAACATTAGTACGTGA
AACAACAGCTTGGGTATCAGGATTATCAAAGCATGTTAAAATTAATAACGAAGCATTAGA
TAAAGAATGTGAGGATTTTTTAAATAAACATAAAATTAAAGCACATAAAGAAATTTGGGC
AGATAATTGGTTCCACTATTGTGATATTGATATTGAAAATAAAGAATCAACATTTACAGA
ATTAACTGCAAAATNTATTTAAGTATTGGATACATTAAACTTTTGTTTTTGGCCAGACTC
AGAATTTGAATATCATCATTTAGCAAGAGGTTTAAAGAATGCATTAATTGCAAATCCXXX
XXXXXXXTTATCTGCAAATAATAAAGCTTCAGTTTTAGTTGATTTGGTAACAAAATACTT
TTGGGGATTTAGAGATAGTGCAATTTATAAAGGTAAACAAGTAGGGTTTTATAAAAGAGC
TCAAATTTTCGTTGGTGATTTATGGGGTGCATATCAAGGTAGAGGTTTAGGTAAATTTGA
TGATATCAAACAATTAACAATGTTTGCTGATTACAGAGTACCACAAATTTTAGAAGAATT
AAAAGTTATTGAGTATTCACCAGAATTAAAAGAAATGATTAAAAATAAAGTTGAAATTCC
AGTTGGTTCAGAAATGGAACTTGAAATTAGAGCTGTAACAGTTCATGTCGTTGAAAAGAT
GAGAGATTACTTTAATAAAGGTCATTGTGAACTTTTAGCATTGGAAATTGATTGGATGTT
ATGGGGTAGAGGTGAAGCTATGTTAGATAAATTACCACCACATCATAGAACTCTTACAAT
CTTTTATTAAAAATAAAAAATAAAAAATAAAAAATAAAAAATAAAAATGAAATTAAATGA
AATTAAATAAAAAA
sequence update 1999. 1.19
Translated Amino Acid sequence 
pf*yilyfqkink*tnk*tnk*tnklililimnpltlvrettawvsglskhvkinneald
kecedflnkhkikahkeiwadnwfhycdidienkestfteltakxi*VLDTLNFCFWPDS
EFEYHHLARGLKNALIAN---

---LSANNKASVLVDLVTKYFWGFRDSAIYKGKQVGFYKRAQIFVGDLWGAYQGRGLGKF
DDIKQLTMFADYRVPQILEELKVIEYSPELKEMIKNKVEIPVGSEMELEIRAVTVHVVEK
MRDYFNKGHCELLALEIDWMLWGRGEAMLDKLPPHHRTLTIFY*k*kiknkk*kikmkln
eik*k
Translated Amino Acid sequence (All Frames) 
Frame A:
plliyfifsknk*ink*ink*inkqinininnesinist*nnslgiriikac*n**rsir
*rm*gffk*t*n*st*rnlgr*lvpll*y*y*k*riniyrinckxylsigyikllflarl
ri*issfskrfkecincks---

---LSANNKASVLVDLVTKYFWGFRDSAIYKGKQVGFYKRAQIFVGDLWGAYQGRGLGKF
DDIKQLTMFADYRVPQILEELKVIEYSPELKEMIKNKVEIPVGSEMELEIRAVTVHVVEK
MRDYFNKGHCELLALEIDWMLWGRGEAMLDKLPPHHRTLTIFY*k*kiknkk*kikmkln
eik*k

Frame B:
pf*yilyfqkink*tnk*tnk*tnklililimnpltlvrettawvsglskhvkinneald
kecedflnkhkikahkeiwadnwfhycdidienkestfteltakxi*VLDTLNFCFWPDS
EFEYHHLARGLKNALIAN---

---ylqiiklqf*liw*qntfgdleivqfikvnk*gfikelkfslviygvhikvev*vnl
misnn*qclliteyhkf*kn*kllsihqn*kk*lkiklkfqlvqkwnlklel*qfmslkr
*eitlikvivnf*hwkligcygvevklc*inyhhiiellqsfiknkk*kiknkk*k*n*m
klnkk

Frame C:
pfnifyifkk*inkqinkqinkqtn*y*y***ih*h*yvkqqlgyqdyqsmlklitkh*i
knvrif*iniklkhikkfgqiigstivililkiknqhlqn*lqnxfkywih*tfvfgqtq
nlniii*qev*rmh*lqi---

---ick**sfsfs*fgnkillgi*r*cnl*r*tsrvl*kssnfrw*fmgcisr*rfr*i*
*yqtinnvc*lqsttnfrriksy*vftrikrnd*k*s*nsswfrngt*n*scnsscr*kd
erll**rsl*tfsign*ldvmg*r*syvr*ittts*nsynlllkiknkk*kiknkneik*
n*ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE367 (SLE367Q) /CSM/SL/SLE3-C/SLE367Q.Seq.d/                       1544   0.0
CFG887 (CFG887Q) /CSM/CF/CFG8-D/CFG887Q.Seq.d/                        930   0.0
CFF747 (CFF747Q) /CSM/CF/CFF7-B/CFF747Q.Seq.d/                        930   0.0
CFF528 (CFF528Q) /CSM/CF/CFF5-B/CFF528Q.Seq.d/                        930   0.0
CFC185 (CFC185Q) /CSM/CF/CFC1-D/CFC185Q.Seq.d/                        930   0.0
CFB705 (CFB705Q) /CSM/CF/CFB7-A/CFB705Q.Seq.d/                        930   0.0
CFA282 (CFA282Q) /CSM/CF/CFA2-D/CFA282Q.Seq.d/                        930   0.0
CFF216 (CFF216Q) /CSM/CF/CFF2-A/CFF216Q.Seq.d/                        870   0.0
CFA570 (CFA570Q) /CSM/CF/CFA5-C/CFA570Q.Seq.d/                        757   0.0
SSB895 (SSB895Q) /CSM/SS/SSB8-D/SSB895Q.Seq.d/                        722   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ372389) Dictyostelium discoideum cDNA clone:ddc12n11, 3' ...   928   0.0    2
(BJ372911) Dictyostelium discoideum cDNA clone:ddc14n22, 3' ...   928   0.0    2
(BJ372081) Dictyostelium discoideum cDNA clone:ddc11o04, 3' ...   821   0.0    4
(AU034937) Dictyostelium discoideum slug cDNA, clone SLE367.      952   0.0    1
(BJ373167) Dictyostelium discoideum cDNA clone:ddc1c22, 3' e...   928   0.0    2
(BJ374011) Dictyostelium discoideum cDNA clone:ddc5i21, 3' e...   928   0.0    1
(BJ373815) Dictyostelium discoideum cDNA clone:ddc4j01, 3' e...   928   0.0    1
(BJ372369) Dictyostelium discoideum cDNA clone:ddc12g07, 3' ...   928   0.0    1
(BJ373303) Dictyostelium discoideum cDNA clone:ddc2k17, 3' e...   757   0.0    2
(BJ359014) Dictyostelium discoideum cDNA clone:ddc12n11, 5' ...   591   0.0    3
dna update 2009. 3.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54II8) RecName: Full=UPF0553 protein;                               525   e-147
EU962308_1(EU962308|pid:none) Zea mays clone 241690 hypothetical...   186   1e-45
EF677858_1(EF677858|pid:none) Picea sitchensis clone WS02776_H19...   184   3e-45
CR954201_252(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   162   2e-38
AK103183_1(AK103183|pid:none) Oryza sativa Japonica Group cDNA c...   158   3e-37
AM431372_4(AM431372|pid:none) Vitis vinifera contig VV78X230175....   151   4e-35
CP001331_252(CP001331|pid:none) Micromonas sp. RCC299 chromosome...   144   6e-33
BT052600_1(BT052600|pid:none) Medicago truncatula clone MTYFD_FE...   132   2e-29
CP000478_312(CP000478|pid:none) Syntrophobacter fumaroxidans MPO...   129   1e-28
AM920436_2020(AM920436|pid:none) Penicillium chrysogenum Wiscons...   116   1e-24
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SLE367 is cyt
5' end seq. ID SLE367F
5' end seq. 
>SLE367F.Seq
CCCCTTTTAATATATTTTATATTTTCAAAAAATAAATAAATAAACAAATAAATAAACAAA
TAAATAAACAAACAAATTAATATTAATATTAATAATGAATCCATTAACATTAGTACGTGA
AACAACAGCTTGGGTATCAGGATTATCAAAGCATGTTAAAATTAATAACGAAGCATTAGA
TAAAGAATGTGAGGATTTTTTAAATAAACATAAAATTAAAGCACATAAAGAAATTTGGGC
AGATAATTGGTTCCACTATTGTGATATTGATATTGAAAATAAAGAATCAACATTTACAGA
ATTAACTGCAAAATNTATTTAAGTATTGGATACATTAAACTTTTGTTTTTGGCCAGACTC
AGAATTTGAATATCATCATTTAGCAAGAGGTTTAAAGAATGCATTAATTGCAAATCC---
-------
Length of 5' end seq. 417
3' end seq. ID SLE367Z
3' end seq. 
>SLE367Z.Seq
----------TTATCTGCAAATAATAAAGCTTCAGTTTTAGTTGATTTGGTAACAAAATA
CTTTTGGGGATTTAGAGATAGTGCAATTTATAAAGGTAAACAAGTAGGGTTTTATAAAAG
AGCTCAAATTTTCGTTGGTGATTTATGGGGTGCATATCAAGGTAGAGGTTTAGGTAAATT
TGATGATATCAAACAATTAACAATGTTTGCTGATTACAGAGTACCACAAATTTTAGAAGA
ATTAAAAGTTATTGAGTATTCACCAGAATTAAAAGAAATGATTAAAAATAAAGTTGAAAT
TCCAGTTGGTTCAGAAATGGAACTTGAAATTAGAGCTGTAACAGTTCATGTCGTTGAAAA
GATGAGAGATTACTTTAATAAAGGTCATTGTGAACTTTTAGCATTGGAAATTGATTGGAT
GTTATGGGGTAGAGGTGAAGCTATGTTAGATAAATTACCACCACATCATAGAACTCTTAC
AATCTTTTATTAAAAATAAAAAATAAAAAATAAAAAATAAAAAATAAAAATGAAATTAAA
TGAAATTAAATAAAAAA
Length of 3' end seq. 547
Connected seq. ID SLE367P
Connected seq. 
>SLE367P.Seq
CCCCTTTTAATATATTTTATATTTTCAAAAAATAAATAAATAAACAAATAAATAAACAAA
TAAATAAACAAACAAATTAATATTAATATTAATAATGAATCCATTAACATTAGTACGTGA
AACAACAGCTTGGGTATCAGGATTATCAAAGCATGTTAAAATTAATAACGAAGCATTAGA
TAAAGAATGTGAGGATTTTTTAAATAAACATAAAATTAAAGCACATAAAGAAATTTGGGC
AGATAATTGGTTCCACTATTGTGATATTGATATTGAAAATAAAGAATCAACATTTACAGA
ATTAACTGCAAAATNTATTTAAGTATTGGATACATTAAACTTTTGTTTTTGGCCAGACTC
AGAATTTGAATATCATCATTTAGCAAGAGGTTTAAAGAATGCATTAATTGCAAATCC---
-------TTATCTGCAAATAATAAAGCTTCAGTTTTAGTTGATTTGGTAACAAAATACTT
TTGGGGATTTAGAGATAGTGCAATTTATAAAGGTAAACAAGTAGGGTTTTATAAAAGAGC
TCAAATTTTCGTTGGTGATTTATGGGGTGCATATCAAGGTAGAGGTTTAGGTAAATTTGA
TGATATCAAACAATTAACAATGTTTGCTGATTACAGAGTACCACAAATTTTAGAAGAATT
AAAAGTTATTGAGTATTCACCAGAATTAAAAGAAATGATTAAAAATAAAGTTGAAATTCC
AGTTGGTTCAGAAATGGAACTTGAAATTAGAGCTGTAACAGTTCATGTCGTTGAAAAGAT
GAGAGATTACTTTAATAAAGGTCATTGTGAACTTTTAGCATTGGAAATTGATTGGATGTT
ATGGGGTAGAGGTGAAGCTATGTTAGATAAATTACCACCACATCATAGAACTCTTACAAT
CTTTTATTAAAAATAAAAAATAAAAAATAAAAAATAAAAAATAAAAATGAAATTAAATGA
AATTAAATAAAAAA
Length of connected seq. 964
Full length Seq ID -
Full length Seq. -
Length of full length seq. -