SLE359
Library SL
(Link to library)
Clone ID SLE359
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15835-1
Original site URL
Representative seq. ID SLE359Z
(Link to Original site)
Representative DNA sequence
>SLE359 (SLE359Q) /CSM/SL/SLE3-C/SLE359Q.Seq.d/
XXXXXXXXXXGAACCAAACTTTCTCCACCTACTCTGATAACCAAACTGGTGTCTTAGTTC
AAGTCTACGAAGGTGAACGTGCTATGACTCGTGATAACAACTTATTAGGTAAATTCGAAT
TAACCAACATCCCACCAGCTCCACGTGGTGTCCCACAAATTGAAGTTACTTTCGATATCG
ATGCCAACGGTATCTTAAATGTCTCTGCTGAAGATAAGAGCACTGGTAACAAACACAAAA
TCACCATCACCAACGATAAAGGTAGACTCACTGCTGAACAAATCGAAAAGATGGTCAAAG
ATGCTGAAATGTTCAAAGCTCAAGATGAAGCCCAACGTGAAGTTGTTGAATCAAAGAACA
AATTAGAAAACTACGCTTACACCGTTCGTAGCACCATTAAAGACGATAAGATCGCCGCCA
AATTATCAAAAGAAGATCGTAAGACCGTCGAAGAGAAATCCGATGAAGCCATCAACTGGT
TACATGCCAACGACTCTGCCACTAAGGAAGAATACGAAAAAGCCATGAAAGATTTAGAAG
CTGTTTGTTCACCAATCATCTCTAAAGTTTACGGTCAACAAGGTGGTGAAAACCCAGGTA
ACTTCTCTGGTGCCAAAACCACTGAAGAAGATTTAGATTAAATTATTTAAATTCTTGTTC
TATAATAAAAAAATATAATATAAAAAAAATTAAAAGCGTTCCCTAAAAA
sequence update 1998. 5.22
Translated Amino Acid sequence
---NQTFSTYSDNQTGVLVQVYEGERAMTRDNNLLGKFELTNIPPAPRGVPQIEVTFDID
ANGILNVSAEDKSTGNKHKITITNDKGRLTAEQIEKMVKDAEMFKAQDEAQREVVESKNK
LENYAYTVRSTIKDDKIAAKLSKEDRKTVEEKSDEAINWLHANDSATKEEYEKAMKDLEA
VCSPIISKVYGQQGGENPGNFSGAKTTEEDLD*ii*ilvl**knii*kklkafpk


Translated Amino Acid sequence (All Frames)
Frame A:
---NQTFSTYSDNQTGVLVQVYEGERAMTRDNNLLGKFELTNIPPAPRGVPQIEVTFDID
ANGILNVSAEDKSTGNKHKITITNDKGRLTAEQIEKMVKDAEMFKAQDEAQREVVESKNK
LENYAYTVRSTIKDDKIAAKLSKEDRKTVEEKSDEAINWLHANDSATKEEYEKAMKDLEA
VCSPIISKVYGQQGGENPGNFSGAKTTEEDLD*ii*ilvl**knii*kklkafpk


Frame B:
---tklspptlitklvs*fkstkvnvl*lvitty*vnsn*ptshqlhvvshklkllsism
ptvs*msllkiralvtntkspsptikvdsllnkskrwskmlkcsklkmkpnvkllnqrtn
*kttltpfvaplktirsppnyqkkivrpskrnpmkpstgympttlplrkntkkp*ki*kl
fvhqsslkftvnkvvktqvtslvpkplkki*iklfkflfynkki*ykkn*krslk


Frame C:
---pnflhll**pnwclssslrr*tcyds**qlir*irinqhptsstwcptn*syfryrc
qrylkclc*r*ehw*qtqnhhhqr*r*thc*tnrkdgqrc*nvqssr*spt*sc*ikeqi
rklrlhrs*hh*rr*drrqiikrrs*drrreir*shqlvtcqrlch*grirksherfrsc
lftnhl*slrstrw*kpr*llwcqnh*rrfrlnylnscsiikkynikkiksvp*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE359 (SLE359Q) /CSM/SL/SLE3-C/SLE359Q.Seq.d/ 1289 0.0
VFE160 (VFE160Q) /CSM/VF/VFE1-C/VFE160Q.Seq.d/ 1281 0.0
SLA801 (SLA801Q) /CSM/SL/SLA8-A/SLA801Q.Seq.d/ 1281 0.0
VHB689 (VHB689Q) /CSM/VH/VHB6-D/VHB689Q.Seq.d/ 1265 0.0
VHK166 (VHK166Q) /CSM/VH/VHK1-C/VHK166Q.Seq.d/ 1263 0.0
VHP508 (VHP508Q) /CSM/VH/VHP5-A/VHP508Q.Seq.d/ 1243 0.0
VHO627 (VHO627Q) /CSM/VH/VHO6-B/VHO627Q.Seq.d/ 1231 0.0
VHJ848 (VHJ848Q) /CSM/VH/VHJ8-B/VHJ848Q.Seq.d/ 1227 0.0
VFG612 (VFG612Q) /CSM/VF/VFG6-A/VFG612Q.Seq.d/ 1227 0.0
VHI852 (VHI852Q) /CSM/VH/VHI8-C/VHI852Q.Seq.d/ 1219 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 1281 0.0 2
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 1281 0.0 1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 68 3e-28 4
X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 68 3e-28 4
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 84 8e-28 4
A58313|A58313.1 Sequence 1 from Patent WO9636707. 84 8e-28 4
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 84 8e-28 4
U25718|U25718.1 Candida albicans stress seventy A subfamily cell wall protein (SSA2) mRNA, partial cds. 92 9e-28 4
AF107118|AF107118.1 Babesia bovis heat shock protein 70 (HSP70) mRNA, complete cds. 100 2e-26 4
BQ410852|BQ410852.1 GA__Ed0034E12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0034E12f, mRNA sequence. 52 1e-24 5
dna update 2004. 3. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 402 e-111
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 402 e-111
(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 289 5e-77
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 289 5e-77
AF033852_1(AF033852|pid:none) Spinacia oleracea cytosolic heat s... 275 1e-72
AY206871_1(AY206871|pid:none) Chlamys farreri heat shock protein... 275 1e-72
U70213_1(U70213|pid:none) Mesocestoides corti heat shock 70kDa p... 274 2e-72
EF580994_1(EF580994|pid:none) Hesiolyra bergi heat shock protein... 274 2e-72
AJ001312_1(AJ001312|pid:none) Oreochromis mossambicus HSP70 gene. 273 3e-72
DQ486134_1(DQ486134|pid:none) Metapenaeus ensis HSC70 (Hsc70) mR... 273 5e-72
protein update 2009. 6. 3
PSORT

psg: 0.75 gvh: 0.34 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLE359 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE359Z
3' end seq.
>SLE359Z.Seq
----------GAACCAAACTTTCTCCACCTACTCTGATAACCAAACTGGTGTCTTAGTTC
AAGTCTACGAAGGTGAACGTGCTATGACTCGTGATAACAACTTATTAGGTAAATTCGAAT
TAACCAACATCCCACCAGCTCCACGTGGTGTCCCACAAATTGAAGTTACTTTCGATATCG
ATGCCAACGGTATCTTAAATGTCTCTGCTGAAGATAAGAGCACTGGTAACAAACACAAAA
TCACCATCACCAACGATAAAGGTAGACTCACTGCTGAACAAATCGAAAAGATGGTCAAAG
ATGCTGAAATGTTCAAAGCTCAAGATGAAGCCCAACGTGAAGTTGTTGAATCAAAGAACA
AATTAGAAAACTACGCTTACACCGTTCGTAGCACCATTAAAGACGATAAGATCGCCGCCA
AATTATCAAAAGAAGATCGTAAGACCGTCGAAGAGAAATCCGATGAAGCCATCAACTGGT
TACATGCCAACGACTCTGCCACTAAGGAAGAATACGAAAAAGCCATGAAAGATTTAGAAG
CTGTTTGTTCACCAATCATCTCTAAAGTTTACGGTCAACAAGGTGGTGAAAACCCAGGTA
ACTTCTCTGGTGCCAAAACCACTGAAGAAGATTTAGATTAAATTATTTAAATTCTTGTTC
TATAATAAAAAAATATAATATAAAAAAAATTAAAAGCGTTCCCTAAAAA
Length of 3' end seq. 699
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -