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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE356
Library SL
(Link to library)
Clone ID SLE356
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLE356F
(Link to Original site)
Representative DNA sequence 
>SLE356 (SLE356Q) /CSM/SL/SLE3-C/SLE356Q.Seq.d/
CNGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGGTAACAGTGGAGGTGCTAC
TGGAGGAAATAGCGGCGGTGCTTCATCATCTGGTGGCAATACTGGAGGTAATAGCGGCGG
TGCTACTGGAGGTAATAGCGGCGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGG
TAACAGTGGAGGTGCTACTGGAGGAAATAGTGGAGGTAACAGTGGTGCCTCATCTTCAGG
AGGTAATAGCGGTTGGTTAACAGGTGGTGCTACTGGTGGTAATAGTGGAGGTGCTACTGG
AGGAAATAGTGGCGCTGCAACCGGAGGAAATAGTGGTGCTACTGGTGGTAATAGTGGAGG
AAATAGTGGCGCTGCAACCGGAGGAAATATTGGAGGTGCTTCAAGTGGTTCCAGTTCTTC
AGGAGGTAATAGCGGTTGGTTAACAGGAGGCGCTACTGGAGGTAATAGTGGCGGTGCTAC
TGGAGGTAATAGTGGCGGTGCTACTGGAGGTAATAGTGGCGGTGCTACTGGAGGTAATAG
TGGAGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGGXXXXXXXXXX
sequence update 1999. 1.19
Translated Amino Acid sequence 
XGATGGNSGGATGGNSGGATGGNSGGASSSGGNTGGNSGGATGGNSGGATGGNSGGATGG
NSGGATGGNSGGNSGASSSGGNSGWLTGGATGGNSGGATGGNSGAATGGNSGATGGNSGG
NSGAATGGNIGGASSGSSSSGGNSGWLTGGATGGNSGGATGGNSGGATGGNSGGATGGNS
GGATGGNSGGAT---
Translated Amino Acid sequence (All Frames) 
Frame A:
xwcywrq*wrcyrw*qwrcywrk*rrcfiiwwqywr**rrcywr**rrcywrq*wrcyrw
*qwrcywrk*wr*qwclifrr**rlvnrwcyww**wrcywrk*wrcnrrk*wcyww**wr
k*wrcnrrkywrcfkwfqffrr**rlvnrrrywr**wrcywr**wrcywr**wrcywr**
wrcywr**wrcy---


Frame B:
XGATGGNSGGATGGNSGGATGGNSGGASSSGGNTGGNSGGATGGNSGGATGGNSGGATGG
NSGGATGGNSGGNSGASSSGGNSGWLTGGATGGNSGGATGGNSGAATGGNSGATGGNSGG
NSGAATGGNIGGASSGSSSSGGNSGWLTGGATGGNSGGATGGNSGGATGGNSGGATGGNS
GGATGGNSGGAT---


Frame C:
vvlleaivevlqvvtvevlleeiaavlhhlvaileviaavlleviaavlleaivevlqvv
tvevlleeivevtvvphlqeviavg*qvvllvvivevlleeivalqpeeivvllvvivee
ivalqpeeilevlqvvpvlqeviavg*qeallevivavllevivavllevivavlleviv
evllevivevll---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE356 (SLE356Q) /CSM/SL/SLE3-C/SLE356Q.Seq.d/                       1144   0.0
SLG686 (SLG686Q) /CSM/SL/SLG6-D/SLG686Q.Seq.d/                       1051   0.0
SLA520 (SLA520Q) /CSM/SL/SLA5-A/SLA520Q.Seq.d/                        969   0.0
CHJ680 (CHJ680Q) /CSM/CH/CHJ6-D/CHJ680Q.Seq.d/                        797   0.0
SLG214 (SLG214Q) /CSM/SL/SLG2-A/SLG214Q.Seq.d/                        696   0.0
SLJ545 (SLJ545Q) /CSM/SL/SLJ5-B/SLJ545Q.Seq.d/                        658   0.0
SLK148 (SLK148Q) /CSM/SL/SLK1-B/SLK148Q.Seq.d/                        617   e-176
SLB441 (SLB441Q) /CSM/SL/SLB4-B/SLB441Q.Seq.d/                        549   e-155
SSE746 (SSE746Q) /CSM/SS/SSE7-B/SSE746Q.Seq.d/                        490   e-137
SHC194 (SHC194Q) /CSM/SH/SHC1-D/SHC194Q.Seq.d/                        476   e-133
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061466) Dictyostelium discoideum slug cDNA, clone SLE356.     1140   0.0    1
(AU061937) Dictyostelium discoideum slug cDNA, clone SLG686.     1047   0.0    1
(AU060177) Dictyostelium discoideum slug cDNA, clone SLA520.      969   0.0    1
(BJ381572) Dictyostelium discoideum cDNA clone:ddc41o20, 3' ...   478   0.0    3
(AU061816) Dictyostelium discoideum slug cDNA, clone SLG214.      696   0.0    1
(AU060381) Dictyostelium discoideum slug cDNA, clone SLJ545.      658   0.0    1
(AU060495) Dictyostelium discoideum slug cDNA, clone SLK148.      617   e-172  1
(AU060774) Dictyostelium discoideum slug cDNA, clone SLB441.      545   e-151  1
(AU072509) Dictyostelium discoideum slug cDNA, clone SSE746.      476   e-130  1
(BJ404550) Dictyostelium discoideum cDNA clone:dds28k23, 3' ...   272   e-129  5
dna update 2009. 3.29
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 45,886,658
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.61  top: 0.53  tms: 0.00  mit: -0.72  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.50
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system

>> prediction for SLE356 is nuc
5' end seq. ID SLE356F
5' end seq. 
>SLE356F.Seq
CNGTGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGGTAACAGTGGAGGTGCTAC
TGGAGGAAATAGCGGCGGTGCTTCATCATCTGGTGGCAATACTGGAGGTAATAGCGGCGG
TGCTACTGGAGGTAATAGCGGCGGTGCTACTGGAGGCAATAGTGGAGGTGCTACAGGTGG
TAACAGTGGAGGTGCTACTGGAGGAAATAGTGGAGGTAACAGTGGTGCCTCATCTTCAGG
AGGTAATAGCGGTTGGTTAACAGGTGGTGCTACTGGTGGTAATAGTGGAGGTGCTACTGG
AGGAAATAGTGGCGCTGCAACCGGAGGAAATAGTGGTGCTACTGGTGGTAATAGTGGAGG
AAATAGTGGCGCTGCAACCGGAGGAAATATTGGAGGTGCTTCAAGTGGTTCCAGTTCTTC
AGGAGGTAATAGCGGTTGGTTAACAGGAGGCGCTACTGGAGGTAATAGTGGCGGTGCTAC
TGGAGGTAATAGTGGCGGTGCTACTGGAGGTAATAGTGGCGGTGCTACTGGAGGTAATAG
TGGAGGTGCTACTGGAGGTAATAGTGGAGGTGCTACTGG----------
Length of 5' end seq. 579
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -