SLE341
Library SL
(Link to library)
Clone ID SLE341
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14686-1
Original site URL
Representative seq. ID SLE341E
(Link to Original site)
Representative DNA sequence
>SLE341 (SLE341Q) /CSM/SL/SLE3-B/SLE341Q.Seq.d/
GGGTATTCATGCCTATATGGCACATAATCTCAGTTTGAATCCAGAATCATCATTGGGTTC
ATACTTTTCACAACTTCCATTAGAGATATTAACATTTGAAGCAGAGAATGCTGGTCTCGA
ATCAATCGCTCAAACTAAATACGATCAACAATCAACTAGTTTACTCTCTGAATTGGAATC
ACTTCAAGGTTCTTTAACAAAACTCGACGAAATGCTCGAATCCATCACCTCCTATATAGA
GTCTGTTGAAAAAGGTGAAATTCAAGGTGATCCACGTCTTGGTCGTTTCCTCGCTAAAAC
TATTCAAGCCTTACCAAAAGCAAATGCTCAAGTCATGGATAAAGTTATCAACAATAGTGT
CAAAGATTTATTGATGATCGTTTATTTATCCTCTCTAACTCGTTCTCAATTAGCTGTTGC
CACTAAAATTAGTCACTCTTTAAGTAATTAAATTATTTATTTAAATTAATTGATTAAAAA
AATAAAAAAAAAAAAATAAAAAAAAAAATAATAATAATTA
sequence update 1998. 5.22
Translated Amino Acid sequence
GIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELES
LQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQALPKANAQVMDKVINNSV
KDLLMIVYLSSLTRSQLAVATKISHSLSN*iiyln*likkikkkk*kkk***l


Translated Amino Acid sequence (All Frames)
Frame A:
gysclygt*sqfesriiigfilfttsirdini*srecwsrinrsn*irstin*ftl*igi
tsrffnktrrnarihhllyrvc*kr*nsr*stswsfpr*nyssltkskcsshg*syqq*c
qrfiddrlfilsnsfsiscch*n*slfk*lnylfklid*knkkkkikkkiiii


Frame B:
GIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELES
LQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQALPKANAQVMDKVINNSV
KDLLMIVYLSSLTRSQLAVATKISHSLSN*iiyln*likkikkkk*kkk***l


Frame C:
vfmpiwhiisv*iqnhhwvhtfhnfh*ry*hlkqrmlvsnqslklntinnqlvyslnwnh
fkvl*qnstkcsnpsppi*sllkkvkfkvihvlvvsslklfkpyqkqmlkswiklstivs
kiy**sfiypl*lvln*llplklvtl*viklfi*in*lkk*kkknkkknnnn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ380 (VHQ380Q) /CSM/VH/VHQ3-D/VHQ380Q.Seq.d/ 942 0.0
SSK488 (SSK488Q) /CSM/SS/SSK4-D/SSK488Q.Seq.d/ 942 0.0
SSD357 (SSD357Q) /CSM/SS/SSD3-C/SSD357Q.Seq.d/ 942 0.0
SLE341 (SLE341Q) /CSM/SL/SLE3-B/SLE341Q.Seq.d/ 942 0.0
SSJ384 (SSJ384Q) /CSM/SS/SSJ3-D/SSJ384Q.Seq.d/ 920 0.0
SLK732 (SLK732Q) /CSM/SL/SLK7-B/SLK732Q.Seq.d/ 315 4e-85
SFJ401 (SFJ401Q) /CSM/SF/SFJ4-A/SFJ401Q.Seq.d/ 44 0.002
AFN356 (AFN356Q) /CSM/AF/AFN3-C/AFN356Q.Seq.d/ 44 0.002
AFJ611 (AFJ611Q) /CSM/AF/AFJ6-A/AFJ611Q.Seq.d/ 44 0.002
AFI561 (AFI561Q) /CSM/AF/AFI5-C/AFI561Q.Seq.d/ 44 0.002

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034797) Dictyostelium discoideum slug cDNA, clone SLE341. 839 0.0 1
(C91334) Dictyostelium discoideum slug cDNA, clone SSK488. 839 0.0 1
(C84877) Dictyostelium discoideum slug cDNA, clone SSD357. 839 0.0 1
(BJ427895) Dictyostelium discoideum cDNA clone:ddv63p19, 5' ... 839 0.0 1
(C90986) Dictyostelium discoideum slug cDNA, clone SSJ384. 470 0.0 2
(AU054109) Dictyostelium discoideum slug cDNA, clone SLK732. 212 1e-50 1
(EC762594) PSE00008020 rw_mgpallid Polysphondylium pallidum ... 72 1e-12 2
(AC094767) Rattus norvegicus clone CH230-5L7, *** SEQUENCING... 50 0.082 1
(EJ140367) 1092343646214 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.3 1
(CC391818) PUHIM71TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 42 2.2 2
dna update 2009. 3.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54C49) RecName: Full=Eukaryotic translation initiation factor ... 244 7e-64
AY062556_1(AY062556|pid:none) Arabidopsis thaliana 26S proteasom... 88 1e-16
EF146071_1(EF146071|pid:none) Populus trichocarpa clone WS0115_F... 86 4e-16
(O04202) RecName: Full=Eukaryotic translation initiation factor ... 86 5e-16
AM431807_1(AM431807|pid:none) Vitis vinifera contig VV78X147737.... 84 2e-15
BT052462_1(BT052462|pid:none) Medicago truncatula clone MTYFD_FE... 82 6e-15
EF086750_1(EF086750|pid:none) Picea sitchensis clone WS02913_N21... 82 8e-15
AF417302_1(AF417302|pid:none) Castanea sativa 26S proteasome reg... 80 3e-14
DQ066200_1(DQ066200|pid:none) Ixodes scapularis isolate ISUFL68 ... 78 1e-13
CR761801_1(CR761801|pid:none) Xenopus tropicalis finished cDNA, ... 69 9e-11
protein update 2009. 7. 5
PSORT

psg: 0.80 gvh: 0.45 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SLE341 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE341E
Full length Seq.
>SLE341E.Seq
GGGTATTCATGCCTATATGGCACATAATCTCAGTTTGAATCCAGAATCATCATTGGGTTC
ATACTTTTCACAACTTCCATTAGAGATATTAACATTTGAAGCAGAGAATGCTGGTCTCGA
ATCAATCGCTCAAACTAAATACGATCAACAATCAACTAGTTTACTCTCTGAATTGGAATC
ACTTCAAGGTTCTTTAACAAAACTCGACGAAATGCTCGAATCCATCACCTCCTATATAGA
GTCTGTTGAAAAAGGTGAAATTCAAGGTGATCCACGTCTTGGTCGTTTCCTCGCTAAAAC
TATTCAAGCCTTACCAAAAGCAAATGCTCAAGTCATGGATAAAGTTATCAACAATAGTGT
CAAAGATTTATTGATGATCGTTTATTTATCCTCTCTAACTCGTTCTCAATTAGCTGTTGC
CACTAAAATTAGTCACTCTTTAAGTAATTAAATTATTTATTTAAATTAATTGATTAAAAA
AATAAAAAAAAAAAAATAAAAAAAAAAATAATAATAATTA
Length of full length seq. 520