NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE330
Library SL
(Link to library)
Clone ID SLE330
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SLE330F
(Link to Original site)
Representative DNA sequence 
>SLE330 (SLE330Q) /CSM/SL/SLE3-B/SLE330Q.Seq.d/
AAATTAAATAAAAAATAAAAATGGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAACG
GTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGACGATGCTCCACGTGCTGTTTTCCCAT
CAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAAGACTCAT
ATGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAAC
ACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAATG
AACTCCGTGTTGCACCAGAAGAACACCCAGTTCTCTTAACCGAAGCTCCATTAAATCCAA
AAGCCAACAGAGAAAAAATGACCCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGT
ACGTTGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGTCGTACCACCGGTATTGTTA
TGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCTTACCAC
ATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTCACCGATTACATGATGAAAATCT
TAACTGAACGTGGTTACTCATTCACCACCACTGCCGAAAGAGAAATCGTCAGAGATATCA
AAGAGAAATTAGCCTACGTCGCCCTCGACTTXXXXXXXXXX
sequence update 1999. 1.19
Translated Amino Acid sequence 
ik*KIKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSY
VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPH
AILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALD---
Translated Amino Acid sequence (All Frames) 
Frame A:
klnkk*kwmvkmfkl*llitvlvcvkpvllvtmlhvlfshqllvvqdtlvlwlvwvkkth
m*vmkpnqrevs*psntqlntvslptgmiwkksgiilstmnsvlhqkntqfs*pklh*iq
kptekk*pklclkpstpqpctlpfkpsypymplvvppvllwiqvmvsptlyqsmkvmpyh
mpsyv*i*lvvispit**ks*lnvvthspplpkeksseiskrn*ptspst---


Frame B:
n*iknkngw*rcssfsy**rfwyv*srfcw*rcstccfpincwsskthwcygwygskrli
cr**spikerylnpqipn*tryryqlg*ygknlasyflq*tpcctrrtpsslnrssiksk
sqqrkndpnyv*nlqhpshvrchssrliliclwsyhrycygfr*wclphctnl*rlcltt
chltfrfsws*shrlhdenln*twllihhhcrkrnrqryqreislrrpr---


Frame C:
ik*KIKMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSY
VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPH
AILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALD---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH344 (SLH344Q) /CSM/SL/SLH3-B/SLH344Q.Seq.d/                       1326   0.0
SLG493 (SLG493Q) /CSM/SL/SLG4-D/SLG493Q.Seq.d/                       1326   0.0
SLE330 (SLE330Q) /CSM/SL/SLE3-B/SLE330Q.Seq.d/                       1326   0.0
SLC549 (SLC549Q) /CSM/SL/SLC5-C/SLC549Q.Seq.d/                       1316   0.0
SLA439 (SLA439Q) /CSM/SL/SLA4-B/SLA439Q.Seq.d/                       1310   0.0
SLE295 (SLE295Q) /CSM/SL/SLE2-D/SLE295Q.Seq.d/                       1308   0.0
SLH494 (SLH494Q) /CSM/SL/SLH4-D/SLH494Q.Seq.d/                       1294   0.0
SLA490 (SLA490Q) /CSM/SL/SLA4-D/SLA490Q.Seq.d/                       1294   0.0
SLA696 (SLA696Q) /CSM/SL/SLA6-D/SLA696Q.Seq.d/                       1267   0.0
VFL311 (VFL311Q) /CSM/VF/VFL3-A/VFL311Q.Seq.d/                       1259   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(DL184440) Protein expression method.                            1326   0.0    1
(DL184438) Protein expression method.                            1326   0.0    1
(M14146) D.discoideum actin 15 gene, complete cds.               1326   0.0    1
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...  1326   0.0    1
(AU062044) Dictyostelium discoideum slug cDNA, clone SLH344.     1326   0.0    1
(AU061891) Dictyostelium discoideum slug cDNA, clone SLG493.     1326   0.0    1
(AU061458) Dictyostelium discoideum slug cDNA, clone SLE330.     1326   0.0    1
(AU060993) Dictyostelium discoideum slug cDNA, clone SLC549.     1316   0.0    1
(AU060150) Dictyostelium discoideum slug cDNA, clone SLA439.     1310   0.0    1
(AU061449) Dictyostelium discoideum slug cDNA, clone SLE295.     1308   0.0    1
dna update 2009. 3.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   453   e-126
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   453   e-126
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   451   e-125
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   450   e-125
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        447   e-124
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   445   e-124
AY294152_1(AY294152|pid:none) Mayorella sp. JJP-2003 actin mRNA,...   445   e-124
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   443   e-123
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          443   e-123
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   441   e-122
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLE330 is cyt
5' end seq. ID SLE330F
5' end seq. 
>SLE330F.Seq
AAATTAAATAAAAAATAAAAATGGATGGTGAAGATGTTCAAGCTTTAGTTATTGATAACG
GTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGACGATGCTCCACGTGCTGTTTTCCCAT
CAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAAGACTCAT
ATGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAACCCTCAAATACCCAATTGAAC
ACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCTGGCATCATACTTTCTACAATG
AACTCCGTGTTGCACCAGAAGAACACCCAGTTCTCTTAACCGAAGCTCCATTAAATCCAA
AAGCCAACAGAGAAAAAATGACCCAAATTATGTTTGAAACCTTCAACACCCCAGCCATGT
ACGTTGCCATTCAAGCCGTCTTATCCTTATATGCCTCTGGTCGTACCACCGGTATTGTTA
TGGATTCAGGTGATGGTGTCTCCCACACTGTACCAATCTATGAAGGTTATGCCTTACCAC
ATGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTCACCGATTACATGATGAAAATCT
TAACTGAACGTGGTTACTCATTCACCACCACTGCCGAAAGAGAAATCGTCAGAGATATCA
AAGAGAAATTAGCCTACGTCGCCCTCGACTT----------
Length of 5' end seq. 691
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -