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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE323
Library SL
(Link to library)
Clone ID SLE323
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09185-1
Original site URL
Representative seq. ID SLE323P
(Link to Original site)
Representative DNA sequence 
>SLE323 (SLE323Q) /CSM/SL/SLE3-A/SLE323Q.Seq.d/
CATTTTGAAAAAAGGTGAAAAAAAAAATGGAAGAAAATAATATTGTACAACCTCAATGTA
ATAATGAATGTTTAGAACATCCATCAGAAATAATTAAATCAGTTTGTATTGAATGTGAAG
AACCAGTATGTATCATATGTATAACAAGCGATAAACATAGAAGTCATACATTTAAATTAC
TTAAAGATGAATATGTTTCTCCAATGATTTCAAAATTAAAAAAAACAATTCCAATTTTTA
AAAACTTTTCAAAATCCATAGAAAAAGTTTTAAAGAAATCAGATATGGAACATGAAGAAA
AAAAAAGCAAACTTGAAAAAATCGGTAATATAGTTAAAACTGAAGCTGATAGAATCATAA
GACATGTTACATTGGTTCTAAATAATTTATTAAGTGAAATTTCCACAGAATGTCAAAAAT
GTGATGATATCCATATGCATATTGATCAAAAATTGAAAACAATTAAATCATCAATTTCAC
ACCTTTCAGATTTATATGATAATGAAAATGAAATTCAAACATCTAATTATGTAGCAGTTT
TAAAACATTATGAACAATCAAAAAAATTACTATCAAGTTTGGATGACCCATTACCAAATT
ATCGTAATATTACATTTTCAATTGXXXXXXXXXXCCACAAAATAAAGTTTTAAAAAAAAC
TATTTTTGATGGTGTAGAATTTACAATCTATGAAAATGGAGGTATTGTTCCTGAAACTGA
AAATATTGCAATTGGAGTTGGCCAAAATTTACCACCAATTTTTCCATCCACTTGTATAAG
ATTATTGTTGCCAGATGGATTTAACCAATCACTTAAGTCATTGCCACCATCAATTGAAAA
TCTTTATATTTTCAATATTGATTATCAACTTGTGAAAGGTTCAATTCCAAATTCTGTAAG
CTATATTTATTTTTGTGATGGGTTTAGCCAAAAGTTGGCAAATGGTGTAGTTCCTGAAAA
TGCTATTGCTATTTCATTGCATGATATCCTATTTGCACCATCAGATGATTTCGTTTCAGG
TGAAACCTTAGTTTATGTCACAGAGTCATTCAAACAATTTCATTGCTTAAAAAGAAATTC
AGAAACAAAATTTGAATTGGGAAAATATCAATATTAATAGTCTTAAGACCTCATGTTCTT
TTTTTTGTGCGTGTGTAAAAATAAAATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
TAAAAATAAAAAACAAATAAT
sequence update 1999. 1.19
Translated Amino Acid sequence 
f*KKVKKKMEENNIVQPQCNNECLEHPSEIIKSVCIECEEPVCIICITSDKHRSHTFKLL
KDEYVSPMISKLKKTIPIFKNFSKSIEKVLKKSDMEHEEKKSKLEKIGNIVKTEADRIIR
HVTLVLNNLLSEISTECQKCDDIHMHIDQKLKTIKSSISHLSDLYDNENEIQTSNYVAVL
KHYEQSKKLLSSLDDPLPNYRNITFSI---

---PQNKVLKKTIFDGVEFTIYENGGIVPETENIAIGVGQNLPPIFPSTCIRLLLPDGFN
QSLKSLPPSIENLYIFNIDYQLVKGSIPNSVSYIYFCDGFSQKLANGVVPENAIAISLHD
ILFAPSDDFVSGETLVYVTESFKQFHCLKRNSETKFELGKYQY**s*dlmffflcvcknk
ilkkkkkkkkktknkkqi
Translated Amino Acid sequence (All Frames) 
Frame A:
hfekr*kkkwkkiilynlnvimnv*nihqk*lnqfvlnvknqyvsyv*qainievihlny
lkmnmflq*fqn*kkqfqflktfqnp*kkf*rnqiwnmkkkkanlkksvi*lklklies*
dmlhwf*iiy*vkfpqnvknvmisicilikn*kqlnhqfhtfqiymimkmkfkhlim*qf
*nimnnqknyyqvwmthyqiivilhfql---

---PQNKVLKKTIFDGVEFTIYENGGIVPETENIAIGVGQNLPPIFPSTCIRLLLPDGFN
QSLKSLPPSIENLYIFNIDYQLVKGSIPNSVSYIYFCDGFSQKLANGVVPENAIAISLHD
ILFAPSDDFVSGETLVYVTESFKQFHCLKRNSETKFELGKYQY**s*dlmffflcvcknk
ilkkkkkkkkktknkkqi

Frame B:
ilkkgekkngrk*ycttsm***mfrtsirnn*isly*m*rtsmyhmynkr*t*ksyi*it
*r*icfsndfkikknnsnf*klfkihrksfkeirygt*rkkkqt*knr*ys*n*s**nhk
tcyigsk*fik*nfhrmskm**ypyay*skienn*iinftpfrfi***k*nsni*lcssf
ktl*tikkitikfg*pitkls*yyifn---

---hkikf*kklflmv*nlqsmkmevlflklkilqlelakiyhqffhplv*dyccqmdlt
nhlshchhqlkififsiliinl*kvqfqil*aififvmglakswqmv*flkmlllfhcmi
sylhhqmisfqvkp*fmsqshsnnfia*keiqkqnlnwenininslktscsffcacvkik
f*kkkkkkkkklkiknk*

Frame C:
f*KKVKKKMEENNIVQPQCNNECLEHPSEIIKSVCIECEEPVCIICITSDKHRSHTFKLL
KDEYVSPMISKLKKTIPIFKNFSKSIEKVLKKSDMEHEEKKSKLEKIGNIVKTEADRIIR
HVTLVLNNLLSEISTECQKCDDIHMHIDQKLKTIKSSISHLSDLYDNENEIQTSNYVAVL
KHYEQSKKLLSSLDDPLPNYRNITFSI---

---tk*sfkknyf*wcriynl*kwrycs*n*kycnwswpkfttnfsihlykiivarwi*p
it*viatin*kslyfqy*lstcerfnskfcklylfl*wv*pkvgkwcss*kcycyfia*y
pictir*frfr*nlslchrviqtisllkkkfrnki*igkisilivlrphvlffvrv*k*n
sekkkkkkkkn*k*ktnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE323 (SLE323Q) /CSM/SL/SLE3-A/SLE323Q.Seq.d/                       1970   0.0
SSL881 (SSL881Q) /CSM/SS/SSL8-D/SSL881Q.Seq.d/                         48   3e-04
SLH634 (SLH634Q) /CSM/SL/SLH6-B/SLH634Q.Seq.d/                         40   0.078
AFC170 (AFC170Q) /CSM/AF/AFC1-C/AFC170Q.Seq.d/                         40   0.078
VSC433 (VSC433Q) /CSM/VS/VSC4-B/VSC433Q.Seq.d/                         38   0.31
VHQ127 (VHQ127Q) /CSM/VH/VHQ1-B/VHQ127Q.Seq.d/                         38   0.31
VHL387 (VHL387Q) /CSM/VH/VHL3-D/VHL387Q.Seq.d/                         38   0.31
VHF145 (VHF145Q) /CSM/VH/VHF1-B/VHF145Q.Seq.d/                         38   0.31
VFG875 (VFG875Q) /CSM/VF/VFG8-D/VFG875Q.Seq.d/                         38   0.31
VFG516 (VFG516Q) /CSM/VF/VFG5-A/VFG516Q.Seq.d/                         38   0.31
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...   993   0.0    5
(AU034781) Dictyostelium discoideum slug cDNA, clone SLE323.     1015   0.0    2
(AU061455) Dictyostelium discoideum slug cDNA, clone SLE323.      502   0.0    3
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    34   0.010  10
(ED619517) GM_WBa0013N05.f GM_WBa Glycine max genomic clone ...    52   0.050  1
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    32   0.14   19
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442...    36   0.27   7
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.36   14
(CP000993) Borrelia recurrentis A1, complete genome.               34   0.62   18
(AF144743) Stizostedion vitreum microsatellite L10, complete...    48   0.78   1
dna update 2009. 3.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115682_10(AC115682|pid:none) Dictyostelium discoideum chromoso...   335   1e-90
AC115604_7(AC115604|pid:none) Dictyostelium discoideum chromosom...   112   2e-23
(Q94481) RecName: Full=FNIP repeat-containing protein cigB;            72   4e-11
U66528_1(U66528|pid:none) Dictyostelium discoideum CigB (cigB) m...    72   4e-11
AC116032_11(AC116032|pid:none) Dictyostelium discoideum chromoso...    72   5e-11
AC117076_9(AC117076|pid:none) Dictyostelium discoideum chromosom...    65   5e-09
AC116987_15(AC116987|pid:none) Dictyostelium discoideum chromoso...    65   6e-09
AC115680_16(AC115680|pid:none) Dictyostelium discoideum chromoso...    64   8e-09
(Q54FS1) RecName: Full=FNIP repeat-containing protein DDB_G02906...    64   1e-08
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    63   2e-08
protein update 2009. 6. 3
PSORT 

 psg: 0.65  gvh: 0.33  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLE323 is cyt
5' end seq. ID SLE323F
5' end seq. 
>SLE323F.Seq
CATTTTGAAAAAAGGTGAAAAAAAAAATGGAAGAAAATAATATTGTACAACCTCAATGTA
ATAATGAATGTTTAGAACATCCATCAGAAATAATTAAATCAGTTTGTATTGAATGTGAAG
AACCAGTATGTATCATATGTATAACAAGCGATAAACATAGAAGTCATACATTTAAATTAC
TTAAAGATGAATATGTTTCTCCAATGATTTCAAAATTAAAAAAAACAATTCCAATTTTTA
AAAACTTTTCAAAATCCATAGAAAAAGTTTTAAAGAAATCAGATATGGAACATGAAGAAA
AAAAAAGCAAACTTGAAAAAATCGGTAATATAGTTAAAACTGAAGCTGATAGAATCATAA
GACATGTTACATTGGTTCTAAATAATTTATTAAGTGAAATTTCCACAGAATGTCAAAAAT
GTGATGATATCCATATGCATATTGATCAAAAATTGAAAACAATTAAATCATCAATTTCAC
ACCTTTCAGATTTATATGATAATGAAAATGAAATTCAAACATCTAATTATGTAGCAGTTT
TAAAACATTATGAACAATCAAAAAAATTACTATCAAGTTTGGATGACCCATTACCAAATT
ATCGTAATATTACATTTTCAATTG----------
Length of 5' end seq. 624
3' end seq. ID SLE323Z
3' end seq. 
>SLE323Z.Seq
----------CCACAAAATAAAGTTTTAAAAAAAACTATTTTTGATGGTGTAGAATTTAC
AATCTATGAAAATGGAGGTATTGTTCCTGAAACTGAAAATATTGCAATTGGAGTTGGCCA
AAATTTACCACCAATTTTTCCATCCACTTGTATAAGATTATTGTTGCCAGATGGATTTAA
CCAATCACTTAAGTCATTGCCACCATCAATTGAAAATCTTTATATTTTCAATATTGATTA
TCAACTTGTGAAAGGTTCAATTCCAAATTCTGTAAGCTATATTTATTTTTGTGATGGGTT
TAGCCAAAAGTTGGCAAATGGTGTAGTTCCTGAAAATGCTATTGCTATTTCATTGCATGA
TATCCTATTTGCACCATCAGATGATTTCGTTTCAGGTGAAACCTTAGTTTATGTCACAGA
GTCATTCAAACAATTTCATTGCTTAAAAAGAAATTCAGAAACAAAATTTGAATTGGGAAA
ATATCAATATTAATAGTCTTAAGACCTCATGTTCTTTTTTTTGTGCGTGTGTAAAAATAA
AATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAACTAAAAATAAAAAACAAATAAT
Length of 3' end seq. 587
Connected seq. ID SLE323P
Connected seq. 
>SLE323P.Seq
CATTTTGAAAAAAGGTGAAAAAAAAAATGGAAGAAAATAATATTGTACAACCTCAATGTA
ATAATGAATGTTTAGAACATCCATCAGAAATAATTAAATCAGTTTGTATTGAATGTGAAG
AACCAGTATGTATCATATGTATAACAAGCGATAAACATAGAAGTCATACATTTAAATTAC
TTAAAGATGAATATGTTTCTCCAATGATTTCAAAATTAAAAAAAACAATTCCAATTTTTA
AAAACTTTTCAAAATCCATAGAAAAAGTTTTAAAGAAATCAGATATGGAACATGAAGAAA
AAAAAAGCAAACTTGAAAAAATCGGTAATATAGTTAAAACTGAAGCTGATAGAATCATAA
GACATGTTACATTGGTTCTAAATAATTTATTAAGTGAAATTTCCACAGAATGTCAAAAAT
GTGATGATATCCATATGCATATTGATCAAAAATTGAAAACAATTAAATCATCAATTTCAC
ACCTTTCAGATTTATATGATAATGAAAATGAAATTCAAACATCTAATTATGTAGCAGTTT
TAAAACATTATGAACAATCAAAAAAATTACTATCAAGTTTGGATGACCCATTACCAAATT
ATCGTAATATTACATTTTCAATTG----------CCACAAAATAAAGTTTTAAAAAAAAC
TATTTTTGATGGTGTAGAATTTACAATCTATGAAAATGGAGGTATTGTTCCTGAAACTGA
AAATATTGCAATTGGAGTTGGCCAAAATTTACCACCAATTTTTCCATCCACTTGTATAAG
ATTATTGTTGCCAGATGGATTTAACCAATCACTTAAGTCATTGCCACCATCAATTGAAAA
TCTTTATATTTTCAATATTGATTATCAACTTGTGAAAGGTTCAATTCCAAATTCTGTAAG
CTATATTTATTTTTGTGATGGGTTTAGCCAAAAGTTGGCAAATGGTGTAGTTCCTGAAAA
TGCTATTGCTATTTCATTGCATGATATCCTATTTGCACCATCAGATGATTTCGTTTCAGG
TGAAACCTTAGTTTATGTCACAGAGTCATTCAAACAATTTCATTGCTTAAAAAGAAATTC
AGAAACAAAATTTGAATTGGGAAAATATCAATATTAATAGTCTTAAGACCTCATGTTCTT
TTTTTTGTGCGTGTGTAAAAATAAAATTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAC
TAAAAATAAAAAACAAATAAT
Length of connected seq. 1211
Full length Seq ID -
Full length Seq. -
Length of full length seq. -