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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE293
Library SL
(Link to library)
Clone ID SLE293
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11611-1
Original site URL
Representative seq. ID SLE293Z
(Link to Original site)
Representative DNA sequence 
>SLE293 (SLE293Q) /CSM/SL/SLE2-D/SLE293Q.Seq.d/
XXXXXXXXXXAGAGTTCAAATGATGATGGAAAATCACCAACAACCAAAGTATTATTTGTT
AGGGGAATTAGAAGTCAAGATGAAGGTGAGTTATTAAGAAAACAATTAGGACCAGAACTT
ATTGAAAAGATTGTTGTACCATTGGATTCACAAAAAAAGACACCACTAGGTCATGCTTTC
ATCTATTGTAACTCAACATCGGACGCAAAGATCATCATGGATCACAATCATGACTTTGAT
TTCATGGGTCAAAAGTTAACAATTTCATGGGGTCTTCCAAAACAAAGAAAGATGATGGAT
GGTTATTTCGCAGCCAATACACCATTGGCCGCTCCACCATATGATTATCATTACTACTTT
CCAGGTTCCGTACCACAAGACTACTATTATACTCCACAAATTCCAATCGTTGATCCAAGA
CGTTCAGGTTACACTGGTCAAAATATGACTGGGGGTCCAGGCGGTAAGTTTGACCATAAA
AAAGAAATGTATCACCCTTATCCAATGGTTACTCCAACAACTAATCCTTATGCTAAATAT
GATACTTTTGGTTATCCACCACCACAAGACCGTTATGGTAAAACTCAAGGTGGTAAACCA
CAACAGAGTAAATATAGATTTTCTCCATATTAATTCTGTTTGAGGACAAAAAAAAAAACA
AAAAAAAAAAC
sequence update 1998. 5.20
Translated Amino Acid sequence 
---SSNDDGKSPTTKVLFVRGIRSQDEGELLRKQLGPELIEKIVVPLDSQKKTPLGHAFI
YCNSTSDAKIIMDHNHDFDFMGQKLTISWGLPKQRKMMDGYFAANTPLAAPPYDYHYYFP
GSVPQDYYYTPQIPIVDPRRSGYTGQNMTGGPGGKFDHKKEMYHPYPMVTPTTNPYAKYD
TFGYPPPQDRYGKTQGGKPQQSKYRFSPY*fclrtkkktkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---efk**wkitnnqsiic*gn*ksr*r*vikktirtrty*kdcctigftkkdttrscfh
ll*lnigrkdhhgsqs*l*fhgskvnnfmgssktkkddgwlfrsqytigrsti*lsllls
rfrttrlllystnsnr*sktfrlhwskydwgsrr*v*p*krnvsplsngysnn*slc*i*
yfwlstttrplw*nsrw*ttte*i*ifsililfedkkknkkkn


Frame B:
---SSNDDGKSPTTKVLFVRGIRSQDEGELLRKQLGPELIEKIVVPLDSQKKTPLGHAFI
YCNSTSDAKIIMDHNHDFDFMGQKLTISWGLPKQRKMMDGYFAANTPLAAPPYDYHYYFP
GSVPQDYYYTPQIPIVDPRRSGYTGQNMTGGPGGKFDHKKEMYHPYPMVTPTTNPYAKYD
TFGYPPPQDRYGKTQGGKPQQSKYRFSPY*fclrtkkktkkk


Frame C:
---vqmmmenhqqpkyyllgelevkmkvsy*enn*dqnllkrllyhwihkkrhh*vmlss
ivtqhrtqrsswitimtliswvks*qfhgvfqnker*wmvisqpihhwplhhmiiittfq
vpyhkttiilhkfqsliqdvqvtlvki*lgvqavsltikkkcitliqwllqqlilmlnmi
llvihhhktvmvklkvvnhnrvnidflhinsv*gqkkkqkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE293 (SLE293Q) /CSM/SL/SLE2-D/SLE293Q.Seq.d/                       1221   0.0
SFJ240 (SFJ240Q) /CSM/SF/SFJ2-B/SFJ240Q.Seq.d/                       1179   0.0
CFC306 (CFC306Q) /CSM/CF/CFC3-A/CFC306Q.Seq.d/                       1179   0.0
VFE796 (VFE796Q) /CSM/VF/VFE7-D/VFE796Q.Seq.d/                       1174   0.0
VFJ838 (VFJ838Q) /CSM/VF/VFJ8-B/VFJ838Q.Seq.d/                       1126   0.0
VFJ689 (VFJ689Q) /CSM/VF/VFJ6-D/VFJ689Q.Seq.d/                       1110   0.0
SFF277 (SFF277Q) /CSM/SF/SFF2-D/SFF277Q.Seq.d/                       1092   0.0
SFG361 (SFG361Q) /CSM/SF/SFG3-C/SFG361Q.Seq.d/                       1070   0.0
SFC528 (SFC528Q) /CSM/SF/SFC5-B/SFC528Q.Seq.d/                       1053   0.0
SLH334 (SLH334Q) /CSM/SL/SLH3-B/SLH334Q.Seq.d/                        963   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034764) Dictyostelium discoideum slug cDNA, clone SLE293.      969   0.0    2
(BJ401805) Dictyostelium discoideum cDNA clone:dds19o10, 3' ...   936   0.0    2
(BJ373872) Dictyostelium discoideum cDNA clone:ddc5l01, 3' e...   936   0.0    2
(BJ428165) Dictyostelium discoideum cDNA clone:ddv10p23, 3' ...   930   0.0    2
(BJ432978) Dictyostelium discoideum cDNA clone:ddv20l10, 3' ...   868   0.0    3
(BJ433085) Dictyostelium discoideum cDNA clone:ddv20a24, 3' ...   862   0.0    4
(BJ398291) Dictyostelium discoideum cDNA clone:dds11i20, 3' ...   440   0.0    4
(BJ400524) Dictyostelium discoideum cDNA clone:dds13j15, 3' ...   936   0.0    2
(BJ399515) Dictyostelium discoideum cDNA clone:dds6g07, 3' e...   848   0.0    3
(AU039277) Dictyostelium discoideum slug cDNA, clone SLH334.      963   0.0    1
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY225854_1(AY225854|pid:none) Bos taurus nucleolin (NCL) mRNA, p...    45   0.002
(Q4R4J7) RecName: Full=Nucleolin;  &AB168220_1(AB168220|pid:none...    45   0.002
(P19338) RecName: Full=Nucleolin; AltName: Full=Protein C23;  &A...    45   0.002
AK127608_1(AK127608|pid:none) Homo sapiens cDNA FLJ45706 fis, cl...    45   0.002
(Q5RF26) RecName: Full=Nucleolin;  &CR857335_1(CR857335|pid:none)      45   0.002
AK166681_1(AK166681|pid:none) Mus musculus blastocyst blastocyst...    44   0.003
AK029128_1(AK029128|pid:none) Mus musculus 10 days neonate skin ...    44   0.003
BC085751_1(BC085751|pid:none) Rattus norvegicus nucleolin, mRNA ...    44   0.003
FJ817497_1(FJ817497|pid:none) Rattus norvegicus strain W nucleol...    44   0.003
JH0148(JH0148;A24088;I63130)nucleolin - rat                            44   0.003
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.55  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for SLE293 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE293Z
3' end seq. 
>SLE293Z.Seq
----------AGAGTTCAAATGATGATGGAAAATCACCAACAACCAAAGTATTATTTGTT
AGGGGAATTAGAAGTCAAGATGAAGGTGAGTTATTAAGAAAACAATTAGGACCAGAACTT
ATTGAAAAGATTGTTGTACCATTGGATTCACAAAAAAAGACACCACTAGGTCATGCTTTC
ATCTATTGTAACTCAACATCGGACGCAAAGATCATCATGGATCACAATCATGACTTTGAT
TTCATGGGTCAAAAGTTAACAATTTCATGGGGTCTTCCAAAACAAAGAAAGATGATGGAT
GGTTATTTCGCAGCCAATACACCATTGGCCGCTCCACCATATGATTATCATTACTACTTT
CCAGGTTCCGTACCACAAGACTACTATTATACTCCACAAATTCCAATCGTTGATCCAAGA
CGTTCAGGTTACACTGGTCAAAATATGACTGGGGGTCCAGGCGGTAAGTTTGACCATAAA
AAAGAAATGTATCACCCTTATCCAATGGTTACTCCAACAACTAATCCTTATGCTAAATAT
GATACTTTTGGTTATCCACCACCACAAGACCGTTATGGTAAAACTCAAGGTGGTAAACCA
CAACAGAGTAAATATAGATTTTCTCCATATTAATTCTGTTTGAGGACAAAAAAAAAAACA
AAAAAAAAAAC
Length of 3' end seq. 661
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -