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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE281
Library SL
(Link to library)
Clone ID SLE281
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SLE281E
(Link to Original site)
Representative DNA sequence 
>SLE281 (SLE281Q) /CSM/SL/SLE2-D/SLE281Q.Seq.d/
AAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGA
AGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAA
TTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAAT
GTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTA
GATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTT
TTTCTATTAAAAGAATAAGAATAAAAATAATAATTTCTAATTGTATA
sequence update 1998. 5.20
Translated Amino Acid sequence 
KCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANN
YWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemf
fy*knknknnnf*ly
Translated Amino Acid sequence (All Frames) 
Frame A:
kmfsn*igswcfscwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*
lldr*kfmgylmgykrlhfnvkg*ke*lwycis*llstcldlwfqne*envwiylvt*nv
fllke*e*k**fliv


Frame B:
KCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANN
YWIVKNSWGTSWGIKGYILMSKDRKNNCGIASVSSYPLA*iygskmnrrmfgsi**pemf
fy*knknknnnf*ly


Frame C:
nvlqlnwimvf*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqii
igslkihgvphgv*kvtf*cqrieriivvlhqlalihlprfmvpk*igecldlssnlkcf
sikririkiiisnci
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE281 (SLE281Q) /CSM/SL/SLE2-D/SLE281Q.Seq.d/                        807   0.0
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        791   0.0
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        791   0.0
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        791   0.0
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/                        791   0.0
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        791   0.0
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        791   0.0
SSI550 (SSI550Q) /CSM/SS/SSI5-C/SSI550Q.Seq.d/                        791   0.0
SSH511 (SSH511Q) /CSM/SS/SSH5-A/SSH511Q.Seq.d/                        791   0.0
SSH164 (SSH164Q) /CSM/SS/SSH1-C/SSH164Q.Seq.d/                        791   0.0
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034756) Dictyostelium discoideum slug cDNA, clone SLE281.      807   0.0    1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   791   0.0    1
(AU052446) Dictyostelium discoideum slug cDNA, clone SLD329.      791   0.0    1
(AU052270) Dictyostelium discoideum slug cDNA, clone SLA477.      791   0.0    1
(AU051886) Dictyostelium discoideum slug cDNA, clone SSC322.      791   0.0    1
(AU039933) Dictyostelium discoideum slug cDNA, clone SLG775.      791   0.0    1
(AU039485) Dictyostelium discoideum slug cDNA, clone SLH872.      791   0.0    1
(AU039170) Dictyostelium discoideum slug cDNA, clone SSM471.      791   0.0    1
(AU038279) Dictyostelium discoideum slug cDNA, clone SSH511.      791   0.0    1
(AU038017) Dictyostelium discoideum slug cDNA, clone SSH164.      791   0.0    1
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   191   5e-48
EF535003_1(EF535003|pid:none) Misgurnus mizolepis cathepsin L mR...    90   2e-17
AF358668_1(AF358668|pid:none) Oncorhynchus mykiss procathepsin L...    90   3e-17
BT058408_1(BT058408|pid:none) Salmo salar clone Contig454 Cathep...    90   3e-17
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083...    90   3e-17
BT081306_1(BT081306|pid:none) Caligus clemensi clone ccle-evs-50...    90   3e-17
U61296_1(U61296|pid:none) Oncorhynchus mykiss cathepsin L mRNA, ...    90   3e-17
AB081845_1(AB081845|pid:none) Engraulis japonicus aCatL mRNA for...    89   4e-17
BT074607_1(BT074607|pid:none) Osmerus mordax clone omor-rgc-519-...    89   5e-17
FJ772427_1(FJ772427|pid:none) Lutjanus argentimaculatus cathepsi...    88   8e-17
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.40  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SLE281 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE281E
Full length Seq. 
>SLE281E.Seq
AAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAGG
TAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATGA
AGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAA
TTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAAT
GTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGCTCTTATCCACTTGCCTA
GATTTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATCTAGTAACCTGAAATGTT
TTTCTATTAAAAGAATAAGAATAAAAATAATAATTTCTAATTGTATA
Length of full length seq. 407