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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE265
Library SL
(Link to library)
Clone ID SLE265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16276-1
Original site URL
Representative seq. ID SLE265Z
(Link to Original site)
Representative DNA sequence 
>SLE265 (SLE265Q) /CSM/SL/SLE2-C/SLE265Q.Seq.d/
XXXXXXXXXXAAAACCAAAAGCTGCCCCAAAGAAGGAAGTCAAAGAAGACGCTGGTGACG
ATGAAGTCGATGAAAAACCAAAAAAGAAAAACCCATTAGATGAATTAGCTCCATCAACCT
TTGTTTTGGATGAATTCAAACGTACCTACTCCAACAATGAAGTCTCCATGTCCATTCCAT
GGTTCTTTGAACACTTTGACAAGGAAGGTTTCTCTGTCTACCAATGTACCTACCAATACA
ATCACGAATTAGGTCCAGTCTTCAAAACTTGCAACTTGGTTGGTGGTTTCTTCCAAAGAC
TCGAAACTCTCCACAAATACGCTTTCGCCTCTATGATCATTTTCGGTGAAGAACAAGGTG
GTGCCGTCAAAGATCAAACCGTCTCTGGTCTCTGGGTTTTCCGTGGTCAAGATTTACCAG
CTGACATGAAAGATTGTGATGATTCTTTAGTCTATGACTGGAAGAAACTCGATGTTGCTG
CTGATAAAGCTATCATTGAATCTTTCCTTGCTTGGGAAGATAAAAACGGTGGTTTCGCTG
GTAAGAAATTCTTACAAGGTAAATTATACAAATAAATTAATTTAAATTTAATTTAAAATT
TTTTTTAAAAAAAAAAAAAAA
sequence update 1998. 5.20
Translated Amino Acid sequence 
---KPKAAPKKEVKEDAGDDEVDEKPKKKNPLDELAPSTFVLDEFKRTYSNNEVSMSIPW
FFEHFDKEGFSVYQCTYQYNHELGPVFKTCNLVGGFFQRLETLHKYAFASMIIFGEEQGG
AVKDQTVSGLWVFRGQDLPADMKDCDDSLVYDWKKLDVAADKAIIESFLAWEDKNGGFAG
KKFLQGKLYK*inlnli*nff*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---KPKAAPKKEVKEDAGDDEVDEKPKKKNPLDELAPSTFVLDEFKRTYSNNEVSMSIPW
FFEHFDKEGFSVYQCTYQYNHELGPVFKTCNLVGGFFQRLETLHKYAFASMIIFGEEQGG
AVKDQTVSGLWVFRGQDLPADMKDCDDSLVYDWKKLDVAADKAIIESFLAWEDKNGGFAG
KKFLQGKLYK*inlnli*nff*kkkk


Frame B:
---nqklpqrrkskktlvtmksmknqkrkth*mn*lhqplfwmnsnvptptmkspcpfhg
slntltrkvslstnvptntitn*vqssklatwlvvsskdsklstntlspl*sfsvknkvv
pskikpslvsgfsvvkiyqlt*kivmil*smtgrnsmllliklslnlsllgkiktvvslv
rnsykvnytnkli*i*fkiffkkkkk


Frame C:
---tkscpkegsqrrrw*r*sr*ktkkekpir*issinlcfg*iqtyllqq*slhvhsmv
l*tl*qgrflclpmylpiqsrirsslqnlqlgwwflpktrnspqirfrlydhfr*rtrwc
rqrsnrlwslgfpwsrfts*herl**ffsl*leetrccc**syh*ifpclgr*krwfrw*
eiltr*iiqin*fkfnlkfflkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN290 (VFN290Q) /CSM/VF/VFN2-D/VFN290Q.Seq.d/                        900   0.0
VFN153 (VFN153Q) /CSM/VF/VFN1-C/VFN153Q.Seq.d/                        900   0.0
VFM853 (VFM853Q) /CSM/VF/VFM8-C/VFM853Q.Seq.d/                        900   0.0
VFM141 (VFM141Q) /CSM/VF/VFM1-B/VFM141Q.Seq.d/                        900   0.0
VFL452 (VFL452Q) /CSM/VF/VFL4-C/VFL452Q.Seq.d/                        900   0.0
VFL423 (VFL423Q) /CSM/VF/VFL4-A/VFL423Q.Seq.d/                        900   0.0
VFL213 (VFL213Q) /CSM/VF/VFL2-A/VFL213Q.Seq.d/                        900   0.0
VFL147 (VFL147Q) /CSM/VF/VFL1-B/VFL147Q.Seq.d/                        900   0.0
VFJ212 (VFJ212Q) /CSM/VF/VFJ2-A/VFJ212Q.Seq.d/                        900   0.0
VFI711 (VFI711Q) /CSM/VF/VFI7-A/VFI711Q.Seq.d/                        900   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C23646) Dictyostelium discoideum gamete cDNA, clone FC-AC13.     928   0.0    2
(BJ429783) Dictyostelium discoideum cDNA clone:ddv4j19, 3' e...   928   0.0    2
(BJ430436) Dictyostelium discoideum cDNA clone:ddv7c09, 3' e...   928   0.0    2
(BJ432568) Dictyostelium discoideum cDNA clone:ddv19g04, 3' ...   928   0.0    2
(BJ402678) Dictyostelium discoideum cDNA clone:dds17m16, 3' ...   928   0.0    2
(BJ399860) Dictyostelium discoideum cDNA clone:dds7d24, 3' e...   928   0.0    2
(BJ430195) Dictyostelium discoideum cDNA clone:ddv6l12, 3' e...   928   0.0    2
(BJ431032) Dictyostelium discoideum cDNA clone:ddv9k17, 3' e...   928   0.0    2
(BJ430807) Dictyostelium discoideum cDNA clone:ddv8j20, 3' e...   928   0.0    2
(BJ428409) Dictyostelium discoideum cDNA clone:ddv11g23, 3' ...   928   0.0    2
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ448229_1(DQ448229|pid:none) Artemia franciscana clone 13RP10.0...   155   1e-36
(P12261) RecName: Full=Elongation factor 1-gamma;          Short...   154   1e-36
BC134217_1(BC134217|pid:none) Danio rerio zgc:163074, mRNA (cDNA...   154   2e-36
AF148813_1(AF148813|pid:none) Drosophila melanogaster translatio...   154   2e-36
(Q9NJH0) RecName: Full=Elongation factor 1-gamma;          Short...   154   2e-36
BT001612_1(BT001612|pid:none) Drosophila melanogaster RE32823 fu...   154   2e-36
AF148814_1(AF148814|pid:none) Drosophila melanogaster translatio...   154   2e-36
DQ440238_1(DQ440238|pid:none) Aedes aegypti clone AET-2855 elong...   152   6e-36
DQ680344_1(DQ680344|pid:none) Argiope argentata elongation facto...   152   9e-36
AY737542_1(AY737542|pid:none) Toxoptera citricida putative trans...   151   1e-35
protein update 2009. 6. 3
PSORT 

 psg: 0.35  gvh: 0.32  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.07
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SLE265 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE265Z
3' end seq. 
>SLE265Z.Seq
----------AAAACCAAAAGCTGCCCCAAAGAAGGAAGTCAAAGAAGACGCTGGTGACG
ATGAAGTCGATGAAAAACCAAAAAAGAAAAACCCATTAGATGAATTAGCTCCATCAACCT
TTGTTTTGGATGAATTCAAACGTACCTACTCCAACAATGAAGTCTCCATGTCCATTCCAT
GGTTCTTTGAACACTTTGACAAGGAAGGTTTCTCTGTCTACCAATGTACCTACCAATACA
ATCACGAATTAGGTCCAGTCTTCAAAACTTGCAACTTGGTTGGTGGTTTCTTCCAAAGAC
TCGAAACTCTCCACAAATACGCTTTCGCCTCTATGATCATTTTCGGTGAAGAACAAGGTG
GTGCCGTCAAAGATCAAACCGTCTCTGGTCTCTGGGTTTTCCGTGGTCAAGATTTACCAG
CTGACATGAAAGATTGTGATGATTCTTTAGTCTATGACTGGAAGAAACTCGATGTTGCTG
CTGATAAAGCTATCATTGAATCTTTCCTTGCTTGGGAAGATAAAAACGGTGGTTTCGCTG
GTAAGAAATTCTTACAAGGTAAATTATACAAATAAATTAATTTAAATTTAATTTAAAATT
TTTTTTAAAAAAAAAAAAAAA
Length of 3' end seq. 611
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -