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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE263
Library SL
(Link to library)
Clone ID SLE263
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLE263Z
(Link to Original site)
Representative DNA sequence 
>SLE263 (SLE263Q) /CSM/SL/SLE2-C/SLE263Q.Seq.d/
XXXXXXXXXXAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTG
AAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACT
CACCAGTCTTAGATTGTCACACNGCTCACATNGCCTGTAAATTCACTGAAATCGTCGATA
AAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAA
AGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCT
TCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCG
TCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTG
CTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTATA
ATAATTTTAAAAAAAA
sequence update 1998. 5.20
Translated Amino Acid sequence 
---RGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHXACKFTEIVDK
VDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAV
GVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---RGMVAGDSKNDPPQETEKFVAQVIVLNHPGQIHAGYSPVLDCHTAHXACKFTEIVDK
VDRRTGAVVAKEGTAAVVLKNGDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAV
GVIKSTVKKAPGKAGDKKGAAAPSKKK*innis**iafynnfkk


Frame B:
---evwslvtpktihhkklknsllklssstiqvksmlvthqs*ivtxltxpvnslkssik
livvlvpslpkkvlppss*rmvmplwsn*phlvqcvlnpslnthh*vvspsei*dkpsps
vssnqpsrkpqvkpvirkvllphqkrnk*iiflnk*hfiiilkk


Frame C:
---rygrw*lqkrsttrn*kircssyrpqpsrsnpcwlltslrlshxshxl*ih*nrr*s
*ssywcrrcqrrycrrrlkew*crygrinpissnvc*ilh*iptirsfrrqryetnrrrr
chqinrqespr*sr**ercccpikkeink*yflinsil**f*kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/                        936   0.0
SLK447 (SLK447Q) /CSM/SL/SLK4-B/SLK447Q.Seq.d/                        936   0.0
SLG782 (SLG782Q) /CSM/SL/SLG7-D/SLG782Q.Seq.d/                        936   0.0
SLE701 (SLE701Q) /CSM/SL/SLE7-A/SLE701Q.Seq.d/                        936   0.0
SLE555 (SLE555Q) /CSM/SL/SLE5-C/SLE555Q.Seq.d/                        936   0.0
SLE403 (SLE403Q) /CSM/SL/SLE4-A/SLE403Q.Seq.d/                        936   0.0
SLE263 (SLE263Q) /CSM/SL/SLE2-C/SLE263Q.Seq.d/                        936   0.0
SLE239 (SLE239Q) /CSM/SL/SLE2-B/SLE239Q.Seq.d/                        936   0.0
SLE193 (SLE193Q) /CSM/SL/SLE1-D/SLE193Q.Seq.d/                        936   0.0
SLE138 (SLE138Q) /CSM/SL/SLE1-B/SLE138Q.Seq.d/                        936   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al...   827   0.0    1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   827   0.0    1
(AU285015) Dictyostelium discoideum gamete cDNA clone:FCL-AA...   827   0.0    1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1...   827   0.0    1
(AU284420) Dictyostelium discoideum gamete cDNA clone:FC-AT2...   827   0.0    1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0...   827   0.0    1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2...   827   0.0    1
(AU266030) Dictyostelium discoideum vegetative cDNA clone:VS...   827   0.0    1
(AU264545) Dictyostelium discoideum vegetative cDNA clone:VS...   827   0.0    1
(AU264497) Dictyostelium discoideum vegetative cDNA clone:VS...   827   0.0    1
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio...   249   2e-65
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati...   249   2e-65
(P18624) RecName: Full=Elongation factor 1-alpha;          Short...   249   2e-65
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor...   186   3e-46
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga...   185   4e-46
AY643816_1(AY643816|pid:none) Lycogala epidendrum elongation fac...   184   1e-45
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo...   184   1e-45
(Q00251) RecName: Full=Elongation factor 1-alpha;          Short...   183   2e-45
AY582829_1(AY582829|pid:none) Acanthamoeba culbertsoni ef1a gene...   183   2e-45
(P40911) RecName: Full=Elongation factor 1-alpha;          Short...   183   2e-45
protein update 2009. 6. 3
PSORT 

 psg: 0.50  gvh: 0.50  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SLE263 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE263Z
3' end seq. 
>SLE263Z.Seq
----------AAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTG
AAAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACT
CACCAGTCTTAGATTGTCACACNGCTCACATNGCCTGTAAATTCACTGAAATCGTCGATA
AAGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAA
AGAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCT
TCACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCG
TCGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTG
CTGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTATA
ATAATTTTAAAAAAAA
Length of 3' end seq. 486
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -