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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE259
Library SL
(Link to library)
Clone ID SLE259
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11840-1
Original site URL
Representative seq. ID SLE259P
(Link to Original site)
Representative DNA sequence 
>SLE259 (SLE259Q) /CSM/SL/SLE2-C/SLE259Q.Seq.d/
ATTTTGCACTTGAAGTTGGACGAAAAAAATTAAAAGTTCAAGTAAGGGTACCGAAAAGGA
AAGAATTAACGCTTGATGTAATGATGGCAAGATCAAAAAAACGTCGAGGACGTCAGCGTA
ACGGATTAAAAGTAGTACGTAACTTTTAACGTATAGCTTACTATTTAGGTTTAAACCGGT
AAAAGGTGGATAATGAGAGTTTATCTACAACAAATTACTGCACATGGAGGAAAAAGCAAG
CCTTAAGAATAACATATCGGAAGTAGAGCAGATAAAAAATGATGGAGCACATAAAAAGGT
TATTTACGAAGAAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCACAAAA
GAGCCGAAAAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTTCGAAA
ATTTATTTAGGCAAAATGTGAGAAGTGTAATAAACACAGGAAAAAAAAGTAGGAGCCAGA
GCGGCAGCAAGAGAAATAATAAATCAAGAATGGGGATATCCATTAGCAAACCATGAAGTA
TTATTTTTAACAAATGTATATCAACCAAAACATATGAAAAGACATCCATTTCATATAGTA
AGAGGAACAGTAGCACCATTAGCAGTAACTTTACCATTAGGATTTTTTGTATTAXXXXXX
XXXXTATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGCCACCATATGGATT
GACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTATTATTACTATCTGG
AGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGGTACATGAAAAGAA
CGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATTTATATAAAACAAA
AAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAATTTTTTGGAAAAGA
AAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATATCAGCAGGAGTAAA
AGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAGAAAATATAGAGCC
AAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAATAACAATCTATTT
sequence update 1999. 1.19
Translated Amino Acid sequence 
ilhlkldekn*kfk*gyrkgkn*rlm**wqdqknvedvsvtd*k*yvtfnv*lti*v*tg
krwimrvylqqitahggkskp*e*higsradkk*wst*kgylrrreicdraifrrkastk
epkkgvntfsekrk*kdfskiylgkm*ev**TQEKKVGARAAAREIINQEWGYPLANHEV
LFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVL---

---YISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHE
KNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAG
VKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIY
Translated Amino Acid sequence (All Frames) 
Frame A:
ilhlkldekn*kfk*gyrkgkn*rlm**wqdqknvedvsvtd*k*yvtfnv*lti*v*tg
krwimrvylqqitahggkskp*e*higsradkk*wst*kgylrrreicdraifrrkastk
epkkgvntfsekrk*kdfskiylgkm*ev**TQEKKVGARAAAREIINQEWGYPLANHEV
LFLTNVYQPKHMKRHPFHIVRGTVAPLAVTLPLGFFVL---

---YISLSPNIAIGCVWPPYGLTVYSYMGLPLLNTVLLLLSGAILTDGYTILTEQKAVHE
KNEKVLAVEEAFKNLMNLYKTKNSINTLTFVDERRDKFFGKESRQEDKIAEQKLIAISAG
VKELRDLDWDLYFFENPENIEPNYKEPTNLSVIEYALITIY

Frame B:
fct*swtkkikssskgtekerina*cndgkikktsrtsa*riksst*lltysllfrfkpv
kgg**efiynkllhmeekaslknniseveqikndgahkkviyeegkyatepyleekhpqk
srkke*thlakkgnerifrkfi*akcekcnkhrkkk*eperqqek**ikngdih*qtmky
yf*qmyinqni*kdihfi**eeq*hh*q*lyh*dfly---

---isvyhqi*q*dvyghhmd*qyihiwdyhy*iqyyyyyleqy*qmviqy*pnkkrymk
rtkky*q*kkhlki**iyikqktv*ih*pl*mkeetnflekkvdkrtrlqnkn**qyqqe
*kn*ei*igiyiflktqki*sqiiknqqtyp**nmh**qsi

Frame C:
falevgrkklkvqvrvpkrkeltldvmmarskkrrgrqrnglkvvrnf*riayylglnr*
kvdneslsttnyctwrkkqalrityrk*sr*kmmehikrlftkkgnmrpshi*kksihkr
aekrskhi*rkkemkgffenlfrqnvrsvintgkksrsqsgskrnnksrmgisiskp*si
ifnkcistktyektsisyskrnsstissnftirifci---

---yqfitkysnrmcmatiwidsifiygitiikysiiitiwsninrwlyninrtksgt*k
erksissrrsi*kfnefi*nkkqykyinlcr*kkrqifwkrk*trgqdcrtkinsnisrs
krikrfrlgfiff*kprkyrakl*rtnklirnricinnnlf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE259 (SLE259Q) /CSM/SL/SLE2-C/SLE259Q.Seq.d/                       2028   0.0
MIT-GENOME (MIT-GENOMEQ) /CSM/OTHERS/MIT-GENOMEQ.Seq.d/              1156   0.0
CFH182 (CFH182Q) /CSM/CF/CFH1-D/CFH182Q.Seq.d/                       1084   0.0
CFK269 (CFK269Q) /CSM/CF/CFK2-C/CFK269Q.Seq.d/                       1017   0.0
VSE831 (VSE831Q) /CSM/VS/VSE8-B/VSE831Q.Seq.d/                        894   0.0
SLE524 (SLE524Q) /CSM/SL/SLE5-A/SLE524Q.Seq.d/                        894   0.0
VSH322 (VSH322Q) /CSM/VS/VSH3-A/VSH322Q.Seq.d/                        882   0.0
VSH272 (VSH272Q) /CSM/VS/VSH2-C/VSH272Q.Seq.d/                        874   0.0
VFC894 (VFC894Q) /CSM/VF/VFC8-D/VFC894Q.Seq.d/                        852   0.0
VSA536 (VSA536Q) /CSM/VS/VSA5-B/VSA536Q.Seq.d/                        775   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D16579|D16579.1 Dictyostelium discoideum mitochondrial DNA for NADH dehydrogenase subunits and cytochrome oxidase subunit ,complete cds.   757   0.0    4
AB000109|AB000109.1 Dictyostelium discoideum mitochondrial DNA, complete sequence.   757   0.0    4
Z98551|Z98551.1 Plasmodium falciparum MAL3P6.                      38   2e-05  14
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    34   4e-05  18
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    32   6e-05  16
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    32   7e-05  16
AC115606|AC115606.2 Dictyostelium discoideum chromosome 2 map 159760-209066 strain AX4, complete sequence.    34   2e-04  8
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   2e-04  21
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    34   2e-04  18
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    32   0.001  14
dna update 2004. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU275726_4(EU275726|pid:none) Polysphondylium pallidum strain PN...    96   2e-18
AY700145_33(AY700145|pid:none) Polysphondylium pallidum mitochon...    95   4e-18
EU275727_5(EU275727|pid:none) Dictyostelium fasciculatum strain ...    83   2e-14
CT573072_267(CT573072|pid:none) Kuenenia stuttgartiensis genome ...    40   0.11
AY521262_12(AY521262|pid:none) Tetraleurodes acaciae mitochondri...    38   0.57
(P48891) RecName: Full=Cytochrome c oxidase subunit 3;          ...    38   0.57
EU621723_5(EU621723|pid:none) Sinergasilus polycolpus mitochondr...    37   1.7
AY521251_5(AY521251|pid:none) Aleurodicus dugesii mitochondrion,...    36   2.8
AF002136_1(AF002136|pid:none) Suillus sinuspaulianus cytochrome ...    36   2.8
AF002151_1(AF002151|pid:none) Suillus punctipes cytochrome oxida...    36   2.8
protein update 2009. 6. 3
PSORT 

 psg: 0.61  gvh: 0.39  alm: 0.27  top: 0.13  tms: 0.13  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: plasma membrane
	 12.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SLE259 is end
5' end seq. ID SLE259F
5' end seq. 
>SLE259F.Seq
ATTTTGCACTTGAAGTTGGACGAAAAAAATTAAAAGTTCAAGTAAGGGTACCGAAAAGGA
AAGAATTAACGCTTGATGTAATGATGGCAAGATCAAAAAAACGTCGAGGACGTCAGCGTA
ACGGATTAAAAGTAGTACGTAACTTTTAACGTATAGCTTACTATTTAGGTTTAAACCGGT
AAAAGGTGGATAATGAGAGTTTATCTACAACAAATTACTGCACATGGAGGAAAAAGCAAG
CCTTAAGAATAACATATCGGAAGTAGAGCAGATAAAAAATGATGGAGCACATAAAAAGGT
TATTTACGAAGAAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCACAAAA
GAGCCGAAAAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTTCGAAA
ATTTATTTAGGCAAAATGTGAGAAGTGTAATAAACACAGGAAAAAAAAGTAGGAGCCAGA
GCGGCAGCAAGAGAAATAATAAATCAAGAATGGGGATATCCATTAGCAAACCATGAAGTA
TTATTTTTAACAAATGTATATCAACCAAAACATATGAAAAGACATCCATTTCATATAGTA
AGAGGAACAGTAGCACCATTAGCAGTAACTTTACCATTAGGATTTTTTGTATTA------
----
Length of 5' end seq. 654
3' end seq. ID SLE259Z
3' end seq. 
>SLE259Z.Seq
----------TATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGCCACCATA
TGGATTGACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTATTATTACT
ATCTGGAGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGGTACATGA
AAAGAACGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATTTATATAA
AACAAAAAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAATTTTTTGG
AAAAGAAAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATATCAGCAGG
AGTAAAAGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAGAAAATAT
AGAGCCAAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAATAACAAT
CTATTT
Length of 3' end seq. 476
Connected seq. ID SLE259P
Connected seq. 
>SLE259P.Seq
ATTTTGCACTTGAAGTTGGACGAAAAAAATTAAAAGTTCAAGTAAGGGTACCGAAAAGGA
AAGAATTAACGCTTGATGTAATGATGGCAAGATCAAAAAAACGTCGAGGACGTCAGCGTA
ACGGATTAAAAGTAGTACGTAACTTTTAACGTATAGCTTACTATTTAGGTTTAAACCGGT
AAAAGGTGGATAATGAGAGTTTATCTACAACAAATTACTGCACATGGAGGAAAAAGCAAG
CCTTAAGAATAACATATCGGAAGTAGAGCAGATAAAAAATGATGGAGCACATAAAAAGGT
TATTTACGAAGAAGGGAAATATGCGACCGAGCCATATTTAGAAGAAAAGCATCCACAAAA
GAGCCGAAAAAAGGAGTAAACACATTTAGCGAAAAAAGGAAATGAAAGGATTTTTCGAAA
ATTTATTTAGGCAAAATGTGAGAAGTGTAATAAACACAGGAAAAAAAAGTAGGAGCCAGA
GCGGCAGCAAGAGAAATAATAAATCAAGAATGGGGATATCCATTAGCAAACCATGAAGTA
TTATTTTTAACAAATGTATATCAACCAAAACATATGAAAAGACATCCATTTCATATAGTA
AGAGGAACAGTAGCACCATTAGCAGTAACTTTACCATTAGGATTTTTTGTATTA------
----TATATCAGTTTATCACCAAATATAGCAATAGGATGTGTATGGCCACCATATGGATT
GACAGTATATTCATATATGGGATTACCATTATTAAATACAGTATTATTATTACTATCTGG
AGCAATATTAACAGATGGTTATACAATATTAACCGAACAAAAAGCGGTACATGAAAAGAA
CGAAAAAGTATTAGCAGTAGAAGAAGCATTTAAAAATTTAATGAATTTATATAAAACAAA
AAACAGTATAAATACATTAACCTTTGTAGATGAAAGAAGAGACAAATTTTTTGGAAAAGA
AAGTAGACAAGAGGACAAGATTGCAGAACAAAAATTAATAGCAATATCAGCAGGAGTAAA
AGAATTAAGAGATTTAGATTGGGATTTATATTTTTTTGAAAACCCAGAAAATATAGAGCC
AAATTATAAAGAACCAACAAACTTATCCGTAATAGAATATGCATTAATAACAATCTATTT
Length of connected seq. 1130
Full length Seq ID -
Full length Seq. -
Length of full length seq. -