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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE255
Library SL
(Link to library)
Clone ID SLE255
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID SLE255Z
(Link to Original site)
Representative DNA sequence 
>SLE255 (SLE255Q) /CSM/SL/SLE2-C/SLE255Q.Seq.d/
XXXXXXXXXXAATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGT
TGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAA
AAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGT
TGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCA
GATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAA
AGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGAT
TGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAA
TATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTAT
GATGATGACAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGAT
TGGGGTAATGATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGAT
GACTTCCAAGATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAAAT
AATAATAATATTAATACAAATAATTTTTTTAAA
sequence update 1998. 5.20
Translated Amino Acid sequence 
---CKRGYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDNTRC
PPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDW
AENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDW
GNDWDNDWDNEDGDNWNDDDFQDANDEWDY*ainflkknnnnintnnffk
Translated Amino Acid sequence (All Frames) 
Frame A:
---m*erl*m*nqt*wlqmlcqensketml*tkfmcqr*kmcchqrqnhlcktnl**ysl
ssklplhmw**n*wckmcsrl*eskm**crmsrfp*mc*ktwwylkl*i*stkttkip*l
g*k*k**s*l**s*l****i*w*l*wp*r*l*w*l*w*l***qllw***l***lgq***l
g**lg**lgq*rw**le***lprck**mgllsh*ffkkk***y*yk*ff*


Frame B:
---CKRGYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDNTRC
PPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRSLDW
AENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDNDNDW
GNDWDNDWDNEDGDNWNDDDFQDANDEWDY*ainflkknnnnintnnffk


Frame C:
---vrevmnvksnmmapnvvsrelqrdhvvnqihvpemknvlppktesfv*nqlviilvv
lqitiayvviklmv*nvfqivrkqdvmmsnvqisidvlkdvvvs*vvnlihqdnqdplig
lkmkmmivtmmivtmmmmnmmvimmavtvtmmvimmvimmmtiimvmmtmimigtmimig
vmigimigtmkmviigmmmtskmqmmngtikplif*kkiiiiliqiifl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        702   0.0
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/                        702   0.0
SLE255 (SLE255Q) /CSM/SL/SLE2-C/SLE255Q.Seq.d/                        702   0.0
SLB231 (SLB231Q) /CSM/SL/SLB2-B/SLB231Q.Seq.d/                        702   0.0
SLB168 (SLB168Q) /CSM/SL/SLB1-C/SLB168Q.Seq.d/                        702   0.0
SHD161 (SHD161Q) /CSM/SH/SHD1-C/SHD161Q.Seq.d/                        702   0.0
SFL210 (SFL210Q) /CSM/SF/SFL2-A/SFL210Q.Seq.d/                        702   0.0
SFL183 (SFL183Q) /CSM/SF/SFL1-D/SFL183Q.Seq.d/                        702   0.0
SFK812 (SFK812Q) /CSM/SF/SFK8-A/SFK812Q.Seq.d/                        702   0.0
SFK755 (SFK755Q) /CSM/SF/SFK7-C/SFK755Q.Seq.d/                        702   0.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034735) Dictyostelium discoideum slug cDNA, clone SLE255.      704   0.0    3
(AU033560) Dictyostelium discoideum slug cDNA, clone SLB168.      704   0.0    3
(AU039918) Dictyostelium discoideum slug cDNA, clone SLG753.      704   0.0    3
(AU039455) Dictyostelium discoideum slug cDNA, clone SLH820.      704   0.0    3
(AU033614) Dictyostelium discoideum slug cDNA, clone SLB231.      704   0.0    3
(M26239) D.discoideum spore coat protein SP60 gene, complete...   704   0.0    3
(X51892) Dictyostelium discoideum SP60 gene for spore coat p...   704   0.0    3
(BJ373047) Dictyostelium discoideum cDNA clone:ddc15b16, 3' ...   704   0.0    3
(BJ376147) Dictyostelium discoideum cDNA clone:ddc21k08, 3' ...   704   0.0    3
(BJ375419) Dictyostelium discoideum cDNA clone:ddc18l14, 3' ...   704   0.0    3
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   278   8e-74
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...   103   6e-21
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...   102   1e-20
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    57   7e-07
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    55   3e-06
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    48   3e-04
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    46   0.001
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    45   0.002
CR940353_318(CR940353|pid:none) Theileria annulata strain Ankara...    44   0.006
BC149826_1(BC149826|pid:none) Bos taurus keratin associated prot...    43   0.010
protein update 2009. 6. 3
PSORT 

 psg: 0.62  gvh: 0.42  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLE255 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE255Z
3' end seq. 
>SLE255Z.Seq
----------AATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATGGCTCCAAATGT
TGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCCAGAGATGAA
AAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAATACTCGT
TGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATGTGTTCCA
GATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATGTGTTGAA
AGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATCCCTTGAT
TGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAA
TATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTAT
GATGATGACAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGATAATGAT
TGGGGTAATGATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAATGATGAT
GACTTCCAAGATGCAAATGATGAATGGGACTATTAAGCCATTAATTTTTTAAAAAAAAAT
AATAATAATATTAATACAAATAATTTTTTTAAA
Length of 3' end seq. 683
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -