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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB247
Library AF
(Link to library)
Clone ID AFB247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID AFB247P
(Link to Original site)
Representative DNA sequence 
>AFB247 (AFB247Q) /CSM/AF/AFB2-B/AFB247Q.Seq.d/
AATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGAC
ACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTT
TCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGA
ATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAA
ACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGAGGT
GGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATTGAA
AATGAAATTATTAACAGGACAGNTTTAATTAGAXXXXXXXXXXTTATTAGAAATTATTGA
TTATGATTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTAT
TAATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAA
AAATCAAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAA
TGATGATGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATC
ATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAAT
CATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGA
TATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAA
GATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGA
TAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTT
TTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAA
TAAATATTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAA
GAATTCAATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQR
MSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSINIGNIDLNDDLIE
NEIINRTXLIR---

---LLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDN
EASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIG
QNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEP
GYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINISF*enn
kknk
Translated Amino Acid sequence (All Frames) 
Frame A:
NAKMNYNFKKKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQR
MSPYGVALYRNLYSQPKIFQTLKKNKSISSSGGGGGSSGGGSYLNSINIGNIDLNDDLIE
NEIINRTXLIR---

---LLEIIDYDSIHHLNSNNNSISSSGSINSKESIKSSGGGSEYDNKYKNQKQQHDEKDN
EASGSSNNNDDENLNKNHIVNSSEFTSPSFDYHHLDELEKEREKQDYEIICNIEPIKFIG
QNEGLLGKDIILCGFPKERIDLSLCQELKIKVDTVYPSIEKGTVSFSDDKRLECNSVPEP
GYSESSLIFSKSDAKFIGLVKSQYMTNPNKYYCIPTSTILTWISQVSKKNSINISF*enn
kknk

Frame B:
mqk*iiiskkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifke
chlmelhyteiyihnlkyfkh*kktkvyqvvvvevvvvevvvi*ivlilvili*mmi*lk
mklltgqx*l---

---y*kllimiqfii*iliiivlvvvvvlivknq*kvvvvvvnmitnikiknnnmmkkim
kqvvvvtimmmki*iktil*ivvnlhhhhliiii*mn*krkernkimksfvilnqlnsla
kmkdywvkilfyvvfqrnvliyhyvkn*r*rliqfihplkreqyhflminv*nvtlyqnq
vtlnph*sfqslmqnllvw*shni*liqiniivyqlqqf*lglvkfqkriqsiflfkkii
kki

Frame C:
cknel*fqkkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfskn
vtlwsctiqkfiftt*nisnikkkqkyik*wwwrw**wrw*lfk*y*yw*y*fk**fn*k
*ny*qdxfn*---

---irny*l*fnssfkf****y***w*y***rinkk*www**i**qi*kskttt**kr**
skw***q****kfk*kpyck***iyitii*lssfr*irkgkretrl*nhl*y*tn*ihwp
k*riig*ryyfmwfskgty*fitmsrikdkg*yslsih*kgnsiif***tfrm*lctrtr
ll*ilinlfkv*ckiywfgkvtiyd*sk*illytnfnnfnld*ssfkkefnqyfflrk**
kk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB247 (AFB247Q) /CSM/AF/AFB2-B/AFB247Q.Seq.d/                       1994   0.0
SFK662 (SFK662Q) /CSM/SF/SFK6-C/SFK662Q.Seq.d/                       1409   0.0
CFE611 (CFE611Q) /CSM/CF/CFE6-A/CFE611Q.Seq.d/                       1409   0.0
AFF227 (AFF227Q) /CSM/AF/AFF2-B/AFF227Q.Seq.d/                       1409   0.0
AFE485 (AFE485Q) /CSM/AF/AFE4-D/AFE485Q.Seq.d/                       1405   0.0
SFE612 (SFE612Q) /CSM/SF/SFE6-A/SFE612Q.Seq.d/                       1402   0.0
AFE138 (AFE138Q) /CSM/AF/AFE1-B/AFE138Q.Seq.d/                       1402   0.0
SFG152 (SFG152Q) /CSM/SF/SFG1-C/SFG152Q.Seq.d/                       1382   0.0
SFJ824 (SFJ824Q) /CSM/SF/SFJ8-A/SFJ824Q.Seq.d/                       1368   0.0
CFI603 (CFI603Q) /CSM/CF/CFI6-A/CFI603Q.Seq.d/                       1366   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    42  3e-11  16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50  2e-09  13
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    42  2e-09  14
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    52  1e-08  13
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40  2e-08  13
AF362369|AF362369.2 Dictyostelium discoideum histidine kinase DhkG (dhkG) gene, complete cds.    36  2e-08  7
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    52  8e-08  12
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    48  9e-08  12
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    48  1e-07  11
AC095424|AC095424.4 Rattus norvegicus clone CH230-7A8, *** SEQUENCING IN PROGRESS ***, 15 unordered pieces.    56  3e-07  8
dna update 2003. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    47   0.001
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for...    36   2.7
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial...    35   3.5
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part...    35   3.5
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL...    35   3.5
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   4.6
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif...    35   4.6
(Q0VC65) RecName: Full=Transcription factor ETV6;  &BC120331_1(B...    35   4.6
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien.         35   4.6
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   5.9
protein update 2009. 3.26
PSORT 

 psg: 0.47  gvh: 0.26  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for AFB247 is nuc
5' end seq. ID AFB247F
5' end seq. 
>AFB247F.Seq
AATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGAC
ACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTT
TCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGA
ATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAA
ACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGAGGT
GGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATTGAA
AATGAAATTATTAACAGGACAGNTTTAATTAGA----------
Length of 5' end seq. 393
3' end seq. ID AFB247Z
3' end seq. 
>AFB247Z.Seq
----------TTATTAGAAATTATTGATTATGATTCAATTCATCATTTAAATTCTAATAA
TAATAGTATTAGTAGTAGTGGTAGTATTAATAGTAAAGAATCAATAAAAAGTAGTGGTGG
TGGTAGTGAATATGATAACAAATATAAAAATCAAAAACAACAACATGATGAAAAAGATAA
TGAAGCAAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTGT
AAATAGTAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAAA
GGAAAGAGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTGG
CCAAAATGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTAT
TGATTTATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGA
AAAGGGAACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAACC
AGGTTACTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGT
AAAGTCACAATATATGACTAATCCAAATAAATATTATTGTATACCAACTTCAACAATTTT
AACTTGGATTAGTCAAGTTTCAAAAAAGAATTCAATCAATATTTCTTTTTAAGAAAATAA
TAAAAAAAATAAA
Length of 3' end seq. 723
Connected seq. ID AFB247P
Connected seq. 
>AFB247P.Seq
AATGCAAAAATGAATTATAATTTCAAAAAAAAAGATTTAAAAGATTGGTCAATTGAAGAC
ACAAAAGAATGGATCAATGAATTTAAAAAAAGAGGACCAAATTTAGAGAATGTGGATTTT
TCAAGATTTGAATGGGATGGTGAACAATTATCATTATTTTCAATGTCAGATTTTCAAAGA
ATGTCACCTTATGGAGTTGCACTATACAGAAATTTATATTCACAACCTAAAATATTTCAA
ACATTAAAAAAAAACAAAAGTATATCAAGTAGTGGTGGTGGAGGTGGTAGTAGTGGAGGT
GGTAGTTATTTAAATAGTATTAATATTGGTAATATTGATTTAAATGATGATTTAATTGAA
AATGAAATTATTAACAGGACAGNTTTAATTAGA----------TTATTAGAAATTATTGA
TTATGATTCAATTCATCATTTAAATTCTAATAATAATAGTATTAGTAGTAGTGGTAGTAT
TAATAGTAAAGAATCAATAAAAAGTAGTGGTGGTGGTAGTGAATATGATAACAAATATAA
AAATCAAAAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAA
TGATGATGAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATC
ATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAAT
CATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGA
TATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAA
GATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGA
TAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTT
TTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACTAATCCAAA
TAAATATTATTGTATACCAACTTCAACAATTTTAACTTGGATTAGTCAAGTTTCAAAAAA
GAATTCAATCAATATTTCTTTTTAAGAAAATAATAAAAAAAATAAA
Length of connected seq. 1116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -