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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE249
Library SL
(Link to library)
Clone ID SLE249
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16325-1
Original site URL
Representative seq. ID SLE249Z
(Link to Original site)
Representative DNA sequence 
>SLE249 (SLE249Q) /CSM/SL/SLE2-C/SLE249Q.Seq.d/
XXXXXXXXXXACCACCAAGAGCATCATGCGATAATGTTAGATGTCCAAGAGGTTACCATT
GTGAATGTAATCATTGGGAAAATGTTGCTAGATGTGTAAGAAACGAAGAACCAACTCATA
GACCAAAACCACCACACCATGGTTGTCGTCCAGATAGTTGCGCTAGAGGTGAGAAATGTA
TCTGTGTACGTGGTAAGGTCTATTGTATTCCAAAGACCACCTGTGATCAAGTACGTTGTC
CAAGAAAACACCATTGTGAATGCAATAGAAAAGGTCAAGTTTTCTGTGTTCCAGATTGTC
CAAAATTAACTTGTAAACAAGTTGGTTGCCCAGAAAACCATGAATGCGTTTCAAGACGTG
GTGAACTCCATTGTGTATACGTTAGACCACCAACAGGTAGATGGGGTGATGATCTCTCAG
ATTTAGGTTACAATCAAGCAAGTGTTGAAGCTGCAATTGATGCTTATGAAGCCCAAAGGG
GTCAAAGACCACATGATAATATTCCATCAAACTATTTACATCAAGAAAACAATGATAATT
TGGGTGATGGTTTTTATGATGGTGTTGAAATTGGTTTCGCTGACGGAGGTTTCGACGTAA
ACGATCTCAATGGTTTTTAAAAAAAAAAAAAAAAATAATTATTAAATTTTTAAAATTATA
AATAATAATCTTCTTATG
sequence update 1998. 5.20
Translated Amino Acid sequence 
---PPRASCDNVRCPRGYHCECNHWENVARCVRNEEPTHRPKPPHHGCRPDSCARGEKCI
CVRGKVYCIPKTTCDQVRCPRKHHCECNRKGQVFCVPDCPKLTCKQVGCPENHECVSRRG
ELHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYEAQRGQRPHDNIPSNYLHQENNDNL
GDGFYDGVEIGFADGGFDVNDLNGF*kkkkk*llnf*nyk**ssy
Translated Amino Acid sequence (All Frames) 
Frame A:
---PPRASCDNVRCPRGYHCECNHWENVARCVRNEEPTHRPKPPHHGCRPDSCARGEKCI
CVRGKVYCIPKTTCDQVRCPRKHHCECNRKGQVFCVPDCPKLTCKQVGCPENHECVSRRG
ELHCVYVRPPTGRWGDDLSDLGYNQASVEAAIDAYEAQRGQRPHDNIPSNYLHQENNDNL
GDGFYDGVEIGFADGGFDVNDLNGF*kkkkk*llnf*nyk**ssy


Frame B:
---hqehhaimldvqevtivnviigkmlldv*etknqlidqnhhtmvvvqivalevrnvs
vyvvrsivfqrppvikyvvqentivnaiekvkfsvfqivqn*lvnklvaqktmnafqdvv
nsivytldhqqvdgvmisqi*vtikqvlklqlmlmkpkgvkdhmiifhqtiyikktmiiw
vmvfmmvlklvsltevst*tismvfkkkkknny*ifkiinnnllm


Frame C:
---tksimr*c*mskrlpl*m*slgkcc*mckkrrtns*tktttpwlssr*lr*r*emyl
ctw*gllyskdhl*sstlskktpl*mq*krssflcsrlskinl*tswlprkp*mrfktw*
tplcir*ttnr*mg**slrfrlqsskc*scn*cl*spkgsktt**ysiklftsrkq**fg
*wfl*wc*nwfr*rrfrrkrsqwflkkkkkiiikflkl*iiifl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE249 (SLE249Q) /CSM/SL/SLE2-C/SLE249Q.Seq.d/                       1205   0.0
SLC649 (SLC649Q) /CSM/SL/SLC6-C/SLC649Q.Seq.d/                       1181   0.0
SLC364 (SLC364Q) /CSM/SL/SLC3-C/SLC364Q.Seq.d/                       1181   0.0
SLC209 (SLC209Q) /CSM/SL/SLC2-A/SLC209Q.Seq.d/                       1181   0.0
SLA746 (SLA746Q) /CSM/SL/SLA7-B/SLA746Q.Seq.d/                       1181   0.0
SLB302 (SLB302Q) /CSM/SL/SLB3-A/SLB302Q.Seq.d/                       1174   0.0
SLB677 (SLB677Q) /CSM/SL/SLB6-D/SLB677Q.Seq.d/                       1166   0.0
SLC695 (SLC695Q) /CSM/SL/SLC6-D/SLC695Q.Seq.d/                       1158   0.0
SLA719 (SLA719Q) /CSM/SL/SLA7-A/SLA719Q.Seq.d/                       1152   0.0
SLG115 (SLG115Q) /CSM/SL/SLG1-A/SLG115Q.Seq.d/                       1122   0.0
own update 1999. 2.19
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034730) Dictyostelium discoideum slug cDNA, clone SLE249.     1205   0.0    1
(AF066071) Dictyostelium discoideum SP85 (pspB) gene, comple...  1181   0.0    1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...  1181   0.0    1
(AU052289) Dictyostelium discoideum slug cDNA, clone SLA746.     1181   0.0    1
(AU034625) Dictyostelium discoideum slug cDNA, clone SLC649.     1181   0.0    1
(AU034513) Dictyostelium discoideum slug cDNA, clone SLC364.     1181   0.0    1
(AU034487) Dictyostelium discoideum slug cDNA, clone SLC209.     1181   0.0    1
(AU033674) Dictyostelium discoideum slug cDNA, clone SLB302.     1174   0.0    1
(AU033972) Dictyostelium discoideum slug cDNA, clone SLB677.     1166   0.0    1
(AU034328) Dictyostelium discoideum slug cDNA, clone SLC695.     1158   0.0    1
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...   458   e-128
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...   331   1e-89
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   108   1e-22
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    79   1e-13
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    77   6e-13
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    73   9e-12
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    73   9e-12
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        72   1e-11
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    72   1e-11
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    67   5e-10
protein update 2009. 6. 3
PSORT 

 psg: 0.55  gvh: 0.29  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SLE249 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE249Z
3' end seq. 
>SLE249Z.Seq
----------ACCACCAAGAGCATCATGCGATAATGTTAGATGTCCAAGAGGTTACCATT
GTGAATGTAATCATTGGGAAAATGTTGCTAGATGTGTAAGAAACGAAGAACCAACTCATA
GACCAAAACCACCACACCATGGTTGTCGTCCAGATAGTTGCGCTAGAGGTGAGAAATGTA
TCTGTGTACGTGGTAAGGTCTATTGTATTCCAAAGACCACCTGTGATCAAGTACGTTGTC
CAAGAAAACACCATTGTGAATGCAATAGAAAAGGTCAAGTTTTCTGTGTTCCAGATTGTC
CAAAATTAACTTGTAAACAAGTTGGTTGCCCAGAAAACCATGAATGCGTTTCAAGACGTG
GTGAACTCCATTGTGTATACGTTAGACCACCAACAGGTAGATGGGGTGATGATCTCTCAG
ATTTAGGTTACAATCAAGCAAGTGTTGAAGCTGCAATTGATGCTTATGAAGCCCAAAGGG
GTCAAAGACCACATGATAATATTCCATCAAACTATTTACATCAAGAAAACAATGATAATT
TGGGTGATGGTTTTTATGATGGTGTTGAAATTGGTTTCGCTGACGGAGGTTTCGACGTAA
ACGATCTCAATGGTTTTTAAAAAAAAAAAAAAAAATAATTATTAAATTTTTAAAATTATA
AATAATAATCTTCTTATG
Length of 3' end seq. 668
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -