SLE239
Library SL
(Link to library)
Clone ID SLE239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16455-1
Original site URL
Representative seq. ID SLE239Z
(Link to Original site)
Representative DNA sequence
>SLE239 (SLE239Q) /CSM/SL/SLE2-B/SLE239Q.Seq.d/
XXXXXXXXXXCCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATCACGAACA
ACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAA
AGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGA
AAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTC
ACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAA
AGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAA
GAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTT
CACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGT
CGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGC
TGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTATAA
TAATTTTA
sequence update 1998. 5.19
Translated Amino Acid sequence
---AGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEK
FVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKN
GDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAA
APSKKK*innis**iafynnf


Translated Amino Acid sequence (All Frames)
Frame A:
---qlvsqlksnqskcitnnsqkpvqvtm*vstlktfqskklkevwslvtpktihhkklk
nsllklssstiqvksmlvthqs*ivtlltlpvnslkssiklivvlvpslpkkvlppss*r
mvmplwsn*phlvqcvlnpslnthh*vvspsei*dkpspsvssnqpsrkpqvkpvirkvl
lphqkrnk*iiflnk*hfiiil


Frame B:
---swsln*sqisrnasrttprspsr*qcrfqr*krfsqrn*krygrw*lqkrsttrn*k
ircssyrpqpsrsnpcwlltslrlshcshcl*ih*nrr*s*ssywcrrcqrrycrrrlke
w*crygrinpissnvc*ilh*iptirsfrrqryetnrrrrchqinrqespr*sr**ercc
cpikkeink*yflinsil**f


Frame C:
---AGLSTEVKSVEMHHEQLPEARPGDNVGFNVKNVSVKEIKRGMVAGDSKNDPPQETEK
FVAQVIVLNHPGQIHAGYSPVLDCHTAHIACKFTEIVDKVDRRTGAVVAKEGTAAVVLKN
GDAAMVELTPSRPMCVESFTEYPPLGRFAVRDMRQTVAVGVIKSTVKKAPGKAGDKKGAA
APSKKK*innis**iafynnf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE380 (VSE380Q) /CSM/VS/VSE3-D/VSE380Q.Seq.d/ 1074 0.0
VSD740 (VSD740Q) /CSM/VS/VSD7-B/VSD740Q.Seq.d/ 1074 0.0
VSD380 (VSD380Q) /CSM/VS/VSD3-D/VSD380Q.Seq.d/ 1074 0.0
VSD312 (VSD312Q) /CSM/VS/VSD3-A/VSD312Q.Seq.d/ 1074 0.0
VFO616 (VFO616Q) /CSM/VF/VFO6-A/VFO616Q.Seq.d/ 1074 0.0
VFO348 (VFO348Q) /CSM/VF/VFO3-B/VFO348Q.Seq.d/ 1074 0.0
VFN666 (VFN666Q) /CSM/VF/VFN6-C/VFN666Q.Seq.d/ 1074 0.0
VFN474 (VFN474Q) /CSM/VF/VFN4-D/VFN474Q.Seq.d/ 1074 0.0
VFN472 (VFN472Q) /CSM/VF/VFN4-C/VFN472Q.Seq.d/ 1074 0.0
VFN448 (VFN448Q) /CSM/VF/VFN4-B/VFN448Q.Seq.d/ 1074 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(X55973) D. discoideum EF1-I gene for elongation factor 1 al... 1074 0.0 1
(AU285021) Dictyostelium discoideum gamete cDNA clone:FCL-AA... 1074 0.0 1
(AU284628) Dictyostelium discoideum gamete cDNA clone:FC-BF1... 1074 0.0 1
(AU284342) Dictyostelium discoideum gamete cDNA clone:FC-AN0... 1074 0.0 1
(AU284225) Dictyostelium discoideum gamete cDNA clone:FC-AA2... 1074 0.0 1
(AU264497) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU263935) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU263821) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU263066) Dictyostelium discoideum vegetative cDNA clone:VS... 1074 0.0 1
(AU060206) Dictyostelium discoideum slug cDNA, clone SLA573. 1074 0.0 1
dna update 2009. 3.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

X55973_1(X55973|pid:none) D. discoideum EF1-I gene for elongatio... 330 1e-89
X55972_1(X55972|pid:none) D. discoideum EF1-II gene for elongati... 330 1e-89
(P18624) RecName: Full=Elongation factor 1-alpha; Short... 330 1e-89
AY542532_1(AY542532|pid:none) Cladonema radiatum translation elo... 254 1e-66
(Q00251) RecName: Full=Elongation factor 1-alpha; Short... 254 2e-66
Y09023_1(Y09023|pid:none) G.cydonium mRNA for elongation factor ... 253 2e-66
AJ581004_1(AJ581004|pid:none) Axinella verrucosa mRNA for elonga... 253 4e-66
FN392319_1522(FN392319|pid:none) Pichia pastoris GS115 chromosom... 252 6e-66
(P41745) RecName: Full=Elongation factor 1-alpha; Short... 251 8e-66
AY643820_1(AY643820|pid:none) Arcyria denudata elongation factor... 251 8e-66
protein update 2009. 6. 3
PSORT

psg: 0.75 gvh: 0.29 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
40.0 %: nuclear
4.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLE239 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE239Z
3' end seq.
>SLE239Z.Seq
----------CCAGCTGGTCTCTCAACTGAAGTCAAATCAGTCGAAATGCATCACGAACA
ACTCCCAGAAGCCCGTCCAGGTGACAATGTAGGTTTCAACGTTAAAAACGTTTCAGTCAA
AGAAATTAAAAGAGGTATGGTCGCTGGTGACTCCAAAAACGATCCACCACAAGAAACTGA
AAAATTCGTTGCTCAAGTTATCGTCCTCAACCATCCAGGTCAAATCCATGCTGGTTACTC
ACCAGTCTTAGATTGTCACACTGCTCACATTGCCTGTAAATTCACTGAAATCGTCGATAA
AGTTGATCGTCGTACTGGTGCCGTCGTTGCCAAAGAAGGTACTGCCGCCGTCGTCTTAAA
GAATGGTGATGCCGCTATGGTCGAATTAACCCCATCTCGTCCAATGTGTGTTGAATCCTT
CACTGAATACCCACCATTAGGTCGTTTCGCCGTCAGAGATATGAGACAAACCGTCGCCGT
CGGTGTCATCAAATCAACCGTCAAGAAAGCCCCAGGTAAAGCCGGTGATAAGAAAGGTGC
TGCTGCCCCATCAAAAAAGAAATAAATAAATAATATTTCTTAATAAATAGCATTTTATAA
TAATTTTA
Length of 3' end seq. 598
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -