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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE232
Library SL
(Link to library)
Clone ID SLE232
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SLE232F
(Link to Original site)
Representative DNA sequence 
>SLE232 (SLE232Q) /CSM/SL/SLE2-B/SLE232Q.Seq.d/
GATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTGTACACCAAGTAGTGGTTTCACA
GATTTTATTCCATCCAATGCAACATGTTCATCATTAAATTGTAATGCTCAACAAATGAGT
TGCAAATATGTTCAACAAGCATGTCATGAAACATCATGTTGTCCTGATATTCCTCAATGT
CAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAGTGCAACTGGTCAAGGCACATCA
GGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACATTTGTACAATA
GTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTCTTCATCAACC
ACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGT
TCAACCACTGGCTCACATACTACTACTGGTGGTTCAGCCACTGGCTCACATACTACTACT
GGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACTACTGGTCCAACATGT
GGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGTTAGAGGTTCCCAAGCTGTTTGT
GTTGCCGATGAATTXXXXXXXXXX
sequence update 1999. 1.19
Translated Amino Acid sequence 
DPQGNIYEFWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSCCPDIPQC
QIPATGGGPATGSATGQGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSST
TGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSATGSHTTTGGSTTGSHTTTGGSTTGPTC
GNVNCPRGYHCEVRGSQAVCVADE---
Translated Amino Acid sequence (All Frames) 
Frame A:
DPQGNIYEFWSSCTPSSGFTDFIPSNATCSSLNCNAQQMSCKYVQQACHETSCCPDIPQC
QIPATGGGPATGSATGQGTSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSST
TGSHTTTGGSTTGSHTTTGGSTTGSHTTTGGSATGSHTTTGGSTTGSHTTTGGSTTGPTC
GNVNCPRGYHCEVRGSQAVCVADE---


Frame B:
ilkvifmnfgvvvhqvvvsqilfhpmqhvhh*ivmlnk*vanmfnkhvmkhhvvliflnv
kflqlavaqllevqlvkahqvvhqvlviklivqmvtfvq**in*qyvflhhplrqvlhqp
lahilplvvqplahilllvvqplahilllvvqplahilllvvqplahilllvvqllvqhv
vmltaqevtivklevpklfvlpmn---


Frame C:
ssr*yl*ile*lytk*wfhrfysiqcnmfiikl*cstnelqicstsms*nimls*yssms
nscnwrwpsywkcnwsrhirwytrfl**s*lskwlhlynsksissmcfsiilfvkffinh
wltyyhwwfnhwltyyywwfnhwltyyywwfshwltyyywwfnhwltyyywwfnywsnmw
*c*lpkrlpl*s*rfpsclccr*---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE232 (SLE232Q) /CSM/SL/SLE2-B/SLE232Q.Seq.d/                       1217   0.0
SFD793 (SFD793Q) /CSM/SF/SFD7-D/SFD793Q.Seq.d/                       1209   0.0
CFC855 (CFC855Q) /CSM/CF/CFC8-C/CFC855Q.Seq.d/                       1154   0.0
CHA516 (CHA516Q) /CSM/CH/CHA5-A/CHA516Q.Seq.d/                       1134   0.0
CHD275 (CHD275Q) /CSM/CH/CHD2-D/CHD275Q.Seq.d/                       1104   0.0
SFJ181 (SFJ181Q) /CSM/SF/SFJ1-D/SFJ181Q.Seq.d/                       1100   0.0
AFN509 (AFN509Q) /CSM/AF/AFN5-A/AFN509Q.Seq.d/                       1090   0.0
CFJ817 (CFJ817Q) /CSM/CF/CFJ8-A/CFJ817Q.Seq.d/                       1086   0.0
CHD579 (CHD579Q) /CSM/CH/CHD5-D/CHD579Q.Seq.d/                       1043   0.0
CHC435 (CHC435Q) /CSM/CH/CHC4-B/CHC435Q.Seq.d/                       1043   0.0
own update 2003. 6.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061435) Dictyostelium discoideum slug cDNA, clone SLE232.     1217   0.0    1
(M26238) D.discoideum spore coat protein SP70 gene, complete...  1209   0.0    1
(BJ388298) Dictyostelium discoideum cDNA clone:dds8j23, 5' e...  1209   0.0    1
(AC115584) Dictyostelium discoideum chromosome 2 map complem...  1193   0.0    1
(BJ360551) Dictyostelium discoideum cDNA clone:ddc6n14, 5' e...  1154   0.0    1
(BJ362724) Dictyostelium discoideum cDNA clone:ddc23o03, 5' ...  1134   0.0    1
(BJ376500) Dictyostelium discoideum cDNA clone:ddc28e20, 3' ...  1104   0.0    1
(BJ401890) Dictyostelium discoideum cDNA clone:dds19a21, 3' ...  1100   0.0    1
(BJ328381) Dictyostelium discoideum cDNA clone:dda28a03, 5' ...  1090   0.0    1
(BJ362070) Dictyostelium discoideum cDNA clone:ddc20b06, 5' ...  1086   0.0    1
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   186   3e-46
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...   134   4e-37
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        74   4e-12
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    74   4e-12
CP001574_180(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    60   4e-08
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    57   4e-07
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...    45   0.002
DQ296176_1(DQ296176|pid:none) Brassica rapa clone 34 unknown mRNA.     42   0.011
AF350602_1(AF350602|pid:none) Brassia caudata maturase (matK) ge...    37   0.018
CP000478_3884(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    42   0.018
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.47  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.12  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLE232 is cyt
5' end seq. ID SLE232F
5' end seq. 
>SLE232F.Seq
GATCCTCAAGGTAATATTTATGAATTTTGGAGTAGTTGTACACCAAGTAGTGGTTTCACA
GATTTTATTCCATCCAATGCAACATGTTCATCATTAAATTGTAATGCTCAACAAATGAGT
TGCAAATATGTTCAACAAGCATGTCATGAAACATCATGTTGTCCTGATATTCCTCAATGT
CAAATTCCTGCAACTGGCGGTGGCCCAGCTACTGGAAGTGCAACTGGTCAAGGCACATCA
GGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACATTTGTACAATA
GTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTCTTCATCAACC
ACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGT
TCAACCACTGGCTCACATACTACTACTGGTGGTTCAGCCACTGGCTCACATACTACTACT
GGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACTACTGGTCCAACATGT
GGTAATGTTAACTGCCCAAGAGGTTACCATTGTGAAGTTAGAGGTTCCCAAGCTGTTTGT
GTTGCCGATGAATT----------
Length of 5' end seq. 614
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -