SLE226
Library SL
(Link to library)
Clone ID SLE226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16540-1
Original site URL
Representative seq. ID SLE226P
(Link to Original site)
Representative DNA sequence
>SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/
AAAAAATAAAAAAAATGAGGATAAATAATTTATTAGTATGTTTGGTTTTAGTTTTCTCAA
CATTATCAATTAGTAATGCAAATCCGGAACATGATAAATGGTGGAAACCTCCTCCTAGAA
ATTGTGATAGTTTGTCAGAGGACCAATGTAAAGCACCAAATTCTGGTTGTAAGTATTTAC
CTTTTGTTTCATGTTGTGGTACAAAGAAATTCTTTTGTGTAGAAGATAATGGAAATGGTT
GTGGAAATGCTCCATTAAGTTGTATGAAAGATTCAAAAACCGATGCAATTTATGAGATTT
GGAGTTCATGTAGACCAAATTCACCATTTTTATATGATTATCAAGTTAGAAATGAAACTT
GTGATCAAAAGCTATGTGAAGCAAGTGGAGGAGTTTGTGAATGGGTTGACCCAGTACCAT
GTATGGGTACATCATGTTGTCCACGTTATCCAGTTTGTAAGGGTGGTGGTGGCGGTGGTG
GACCAGTCTCACCATGTAAGAATGTAATTTGTCCAGAGGATTATTGTTGTCAAGATATTC
ATGGTGGAGCTTACTGTGTTGAAAAGCCAAGACCACCACCACCAAAACCACATCATCTCT
GTAAAGCTATTAAATGTGGTAGAGGAAAAGAATGTATTGTAAAXXXXXXXXXXTGTCCAC
CAGGATATGATTGCGTGGTCGACTCTCACCATCGTCCACATTGCCAAAGACCAAATCCAG
GCTCATTATGTCGTAATGTAACTTGTCCATATGGCTATGTTTGCAAGGCAATTAATAATC
TTCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTTACATTGCC
CATCTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGAAACCCATC
CAGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTC
CTAATAAATGTCCAAGAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTAC
CATCAAATTCTAATGATGATTATGATAATGATCCTAATGGATATGATGATAATGAAAATG
AGGGTGATGGATTATCAATTCCATGTGGCCCAATTATCACTTGTAAATTAAATGAAATTT
GTTTATTAGAACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAA
CTAAATGTGTTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATAACTCCAT
ATTAAATTTAAATAAAAAAAAAATATATATTTTCATTTTTCAAAAAAA
sequence update 1999. 1.19
Translated Amino Acid sequence
KIKKMRINNLLVCLVLVFSTLSISNANPEHDKWWKPPPRNCDSLSEDQCKAPNSGCKYLP
FVSCCGTKKFFCVEDNGNGCGNAPLSCMKDSKTDAIYEIWSSCRPNSPFLYDYQVRNETC
DQKLCEASGGVCEWVDPVPCMGTSCCPRYPVCKGGGGGGGPVSPCKNVICPEDYCCQDIH
GGAYCVEKPRPPPPKPHHLCKAIKCGRGKECIV---

---CPPGYDCVVDSHHRPHCQRPNPGSLCRNVTCPYGYVCKAINNLPTCIRNPLPPNYPC
RDLHCPSGYSCEIINDLPSCVRETHPGHCKTCHDVNCGSLDCAMVPNKCPRGSRDCCIQI
PSCRLPSNSNDDYDNDPNGYDDNENEGDGLSIPCGPIITCKLNEICLLEQSRCAPLCEFV
KCSPGTKCVADTTGIPVCLPNGITPY*i*ikkkyifsffkk


Translated Amino Acid sequence (All Frames)
Frame A:
kk*kk*g*iiy*yvwf*fsqhyqlvmqirnminggnllleivivcqrtnvkhqilvvsiy
llfhvvvqrnsfv*kimemvvemlh*vv*kiqkpmqfmrfgvhvdqihhfymiiklemkl
viksyvkqveefvngltqyhvwvhhvvhviqfvrvvvavvdqshhvrm*fvqriivvkif
mveltvlksqdhhhqnhiisvkllnvveeknvl*---

---CPPGYDCVVDSHHRPHCQRPNPGSLCRNVTCPYGYVCKAINNLPTCIRNPLPPNYPC
RDLHCPSGYSCEIINDLPSCVRETHPGHCKTCHDVNCGSLDCAMVPNKCPRGSRDCCIQI
PSCRLPSNSNDDYDNDPNGYDDNENEGDGLSIPCGPIITCKLNEICLLEQSRCAPLCEFV
KCSPGTKCVADTTGIPVCLPNGITPY*i*ikkkyifsffkk

Frame B:
knkknedk*fismfgfsflniin**cksgt**mvetss*kl**fvrgpm*stkfwl*vft
fcfmlwykeillcrr*wkwlwkcsiklyerfknrcnl*dlefm*tkftifi*lss*k*nl
*skam*skwrsl*mg*pstmygyimlstlssl*gwwwrwwtsltm*ecnlsrglllsrys
wwsllc*kakttttkttssl*sy*mw*rkrmyck---

---vhqdmiawstltivhiakdqiqahyvvm*lvhmamfarqliifqhvfvihyhqtthv
eiyiahldtlakssmishha*ekpiqvivklvmmlivvhwiaqwflinvqevlvtavfkf
hrvvyhqilmmimimilmdmmimkmrvmdyqfhvaqlslvn*mkfvy*nnhvvphyvnl*
nvhqelnvlliqlefqfvyqme*lhikfk*kkniyfhfskk

Frame C:
KIKKMRINNLLVCLVLVFSTLSISNANPEHDKWWKPPPRNCDSLSEDQCKAPNSGCKYLP
FVSCCGTKKFFCVEDNGNGCGNAPLSCMKDSKTDAIYEIWSSCRPNSPFLYDYQVRNETC
DQKLCEASGGVCEWVDPVPCMGTSCCPRYPVCKGGGGGGGPVSPCKNVICPEDYCCQDIH
GGAYCVEKPRPPPPKPHHLCKAIKCGRGKECIV---

---stri*lrgrlspsstlpktksrlims*cnlsiwlclqgn**ssnmys*sittklpm*
rftlpiwillrnhq*spimrkrnpsrsl*nls*c*lwfiglrngs**mskrfs*llysns
ivsftikf***l***s*wi****k*g*wiinsmwpnyhl*ik*nlfirtitlcpim*ick
mftrn*mcc*ynwnsslftkwnnsilnlnkkkiyififqk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE226 (SLE226Q) /CSM/SL/SLE2-B/SLE226Q.Seq.d/ 2434 0.0
SLH875 (SLH875Q) /CSM/SL/SLH8-D/SLH875Q.Seq.d/ 1229 0.0
SLA763 (SLA763Q) /CSM/SL/SLA7-C/SLA763Q.Seq.d/ 1229 0.0
AFF405 (AFF405Q) /CSM/AF/AFF4-A/AFF405Q.Seq.d/ 1229 0.0
AFD181 (AFD181Q) /CSM/AF/AFD1-D/AFD181Q.Seq.d/ 1229 0.0
AFA830 (AFA830Q) /CSM/AF/AFA8-B/AFA830Q.Seq.d/ 1229 0.0
AFM176 (AFM176Q) /CSM/AF/AFM1-D/AFM176Q.Seq.d/ 1223 0.0
AFM107 (AFM107Q) /CSM/AF/AFM1-A/AFM107Q.Seq.d/ 1223 0.0
AFI553 (AFI553Q) /CSM/AF/AFI5-C/AFI553Q.Seq.d/ 1223 0.0
AFH406 (AFH406Q) /CSM/AF/AFH4-A/AFH406Q.Seq.d/ 1221 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU061431) Dictyostelium discoideum slug cDNA, clone SLE226. 1245 0.0 1
(BJ324948) Dictyostelium discoideum cDNA clone:dda8g24, 5' e... 1221 0.0 1
(BJ329083) Dictyostelium discoideum cDNA clone:dda30p16, 5' ... 1215 0.0 1
(BJ323829) Dictyostelium discoideum cDNA clone:dda12p07, 5' ... 1211 0.0 1
(BJ326028) Dictyostelium discoideum cDNA clone:dda3p11, 5' e... 1199 0.0 1
(BJ326276) Dictyostelium discoideum cDNA clone:dda15k06, 5' ... 1191 0.0 1
(BJ328883) Dictyostelium discoideum cDNA clone:dda29o21, 5' ... 1166 0.0 1
(BJ330132) Dictyostelium discoideum cDNA clone:dda27a15, 5' ... 1160 0.0 1
(BJ325752) Dictyostelium discoideum cDNA clone:dda2h04, 5' e... 1158 0.0 1
(BJ359891) Dictyostelium discoideum cDNA clone:ddc3k04, 5' e... 1156 0.0 1
dna update 2009. 3.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 810 0.0
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 211 6e-53
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 204 4e-51
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 116 2e-24
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 114 1e-23
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 107 9e-22
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 74 9e-12
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 69 3e-10
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 66 3e-09
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso... 65 7e-09
protein update 2009. 6. 3
PSORT

psg: 0.98 gvh: 0.81 alm: 0.40 top: 0.23 tms: 0.00 mit: 0.32 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: endoplasmic reticulum
8.0 %: cytoplasmic
8.0 %: vacuolar
4.0 %: mitochondrial
4.0 %: nuclear

>> prediction for SLE226 is exc

5' end seq. ID SLE226F
5' end seq.
>SLE226F.Seq
AAAAAATAAAAAAAATGAGGATAAATAATTTATTAGTATGTTTGGTTTTAGTTTTCTCAA
CATTATCAATTAGTAATGCAAATCCGGAACATGATAAATGGTGGAAACCTCCTCCTAGAA
ATTGTGATAGTTTGTCAGAGGACCAATGTAAAGCACCAAATTCTGGTTGTAAGTATTTAC
CTTTTGTTTCATGTTGTGGTACAAAGAAATTCTTTTGTGTAGAAGATAATGGAAATGGTT
GTGGAAATGCTCCATTAAGTTGTATGAAAGATTCAAAAACCGATGCAATTTATGAGATTT
GGAGTTCATGTAGACCAAATTCACCATTTTTATATGATTATCAAGTTAGAAATGAAACTT
GTGATCAAAAGCTATGTGAAGCAAGTGGAGGAGTTTGTGAATGGGTTGACCCAGTACCAT
GTATGGGTACATCATGTTGTCCACGTTATCCAGTTTGTAAGGGTGGTGGTGGCGGTGGTG
GACCAGTCTCACCATGTAAGAATGTAATTTGTCCAGAGGATTATTGTTGTCAAGATATTC
ATGGTGGAGCTTACTGTGTTGAAAAGCCAAGACCACCACCACCAAAACCACATCATCTCT
GTAAAGCTATTAAATGTGGTAGAGGAAAAGAATGTATTGTAAA----------
Length of 5' end seq. 643
3' end seq. ID SLE226Z
3' end seq.
>SLE226Z.Seq
----------TGTCCACCAGGATATGATTGCGTGGTCGACTCTCACCATCGTCCACATTG
CCAAAGACCAAATCCAGGCTCATTATGTCGTAATGTAACTTGTCCATATGGCTATGTTTG
CAAGGCAATTAATAATCTTCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATG
TAGAGATTTACATTGCCCATCTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATG
CGTAAGAGAAACCCATCCAGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATT
GGATTGCGCAATGGTTCCTAATAAATGTCCAAGAGGTTCTCGTGACTGCTGTATTCAAAT
TCCATCGTGTCGTTTACCATCAAATTCTAATGATGATTATGATAATGATCCTAATGGATA
TGATGATAATGAAAATGAGGGTGATGGATTATCAATTCCATGTGGCCCAATTATCACTTG
TAAATTAAATGAAATTTGTTTATTAGAACAATCACGTTGTGCCCCATTATGTGAATTTGT
AAAATGTTCACCAGGAACTAAATGTGTTGCTGATACAACTGGAATTCCAGTTTGTTTACC
AAATGGAATAACTCCATATTAAATTTAAATAAAAAAAAAATATATATTTTCATTTTTCAA
AAAAA
Length of 3' end seq. 655
Connected seq. ID SLE226P
Connected seq.
>SLE226P.Seq
AAAAAATAAAAAAAATGAGGATAAATAATTTATTAGTATGTTTGGTTTTAGTTTTCTCAA
CATTATCAATTAGTAATGCAAATCCGGAACATGATAAATGGTGGAAACCTCCTCCTAGAA
ATTGTGATAGTTTGTCAGAGGACCAATGTAAAGCACCAAATTCTGGTTGTAAGTATTTAC
CTTTTGTTTCATGTTGTGGTACAAAGAAATTCTTTTGTGTAGAAGATAATGGAAATGGTT
GTGGAAATGCTCCATTAAGTTGTATGAAAGATTCAAAAACCGATGCAATTTATGAGATTT
GGAGTTCATGTAGACCAAATTCACCATTTTTATATGATTATCAAGTTAGAAATGAAACTT
GTGATCAAAAGCTATGTGAAGCAAGTGGAGGAGTTTGTGAATGGGTTGACCCAGTACCAT
GTATGGGTACATCATGTTGTCCACGTTATCCAGTTTGTAAGGGTGGTGGTGGCGGTGGTG
GACCAGTCTCACCATGTAAGAATGTAATTTGTCCAGAGGATTATTGTTGTCAAGATATTC
ATGGTGGAGCTTACTGTGTTGAAAAGCCAAGACCACCACCACCAAAACCACATCATCTCT
GTAAAGCTATTAAATGTGGTAGAGGAAAAGAATGTATTGTAAA----------TGTCCAC
CAGGATATGATTGCGTGGTCGACTCTCACCATCGTCCACATTGCCAAAGACCAAATCCAG
GCTCATTATGTCGTAATGTAACTTGTCCATATGGCTATGTTTGCAAGGCAATTAATAATC
TTCCAACATGTATTCGTAATCCATTACCACCAAACTACCCATGTAGAGATTTACATTGCC
CATCTGGATACTCTTGCGAAATCATCAATGATCTCCCATCATGCGTAAGAGAAACCCATC
CAGGTCATTGTAAAACTTGTCATGATGTTAATTGTGGTTCATTGGATTGCGCAATGGTTC
CTAATAAATGTCCAAGAGGTTCTCGTGACTGCTGTATTCAAATTCCATCGTGTCGTTTAC
CATCAAATTCTAATGATGATTATGATAATGATCCTAATGGATATGATGATAATGAAAATG
AGGGTGATGGATTATCAATTCCATGTGGCCCAATTATCACTTGTAAATTAAATGAAATTT
GTTTATTAGAACAATCACGTTGTGCCCCATTATGTGAATTTGTAAAATGTTCACCAGGAA
CTAAATGTGTTGCTGATACAACTGGAATTCCAGTTTGTTTACCAAATGGAATAACTCCAT
ATTAAATTTAAATAAAAAAAAAATATATATTTTCATTTTTCAAAAAAA
Length of connected seq. 1298
Full length Seq ID -
Full length Seq. -
Length of full length seq. -