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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE196
Library SL
(Link to library)
Clone ID SLE196
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16453-1
Original site URL
Representative seq. ID SLE196Z
(Link to Original site)
Representative DNA sequence 
>SLE196 (SLE196Q) /CSM/SL/SLE1-D/SLE196Q.Seq.d/
XXXXXXXXXXGAATTAACCCTTGAAGGTATTAGACAATTCTACGTCAACGTTGGTGTTGA
ACAAGGTAAATTTGAAGTTTTAACCGATCTCTACGAAACCCTCTCTATCACTCAATCCGT
TATTTTCTGTAACACCCGTAGAAAGGTCGATTGGTTAACAAGCAAAATGACCGAACAAAA
ATTCACCGTCTCATCAACTCACGGTGACCAAAAGGATCGTGATGGTATCTTACAAGCTTT
CCGTTCTGGTGCTACTCGTGTCCTCATCACCACCGATCTCTTAGCTCGTGGTATTGATGT
CCAACAAGTATCACTCGTTATCAACTTTGATTTACCAACCAACATTGAAAATTACATTCA
TCGTATCGGTCGTTCAGGTCGTTTCGGTCGTAAGGGTGTTGCCATCAACTTTATCACTGA
CGCTGAAAGAGGTCAAATCGATGAATTATCTCGTCATTACAATACCTACATTGCCGAAAT
GCCACAAGACATTGGAAGTTTCCTCTAAACGAGTTCCAAAAATGGTTTATAGTTCAGTTG
GTCCCCATTTGGTGAGGGCCATAGGGTTTATAAATCGACCGCCCCCCTCCCTATCCAATA
CTCACACCACAACAACATATTTCATCCGCTCATTATAAAAACAACAAAAACTTCAAATAT
TTTACACCTCGTTTAAT
sequence update 1998. 5.18
Translated Amino Acid sequence 
---LTLEGIRQFYVNVGVEQGKFEVLTDLYETLSITQSVIFCNTRRKVDWLTSKMTEQKF
TVSSTHGDQKDRDGILQAFRSGATRVLITTDLLARGIDVQQVSLVINFDLPTNIENYIHR
IGRSGRFGRKGVAINFITDAERGQIDELSRHYNTYIAEMPQDIGSFL*tsskngl*fsws
pfgeghrvykstaplpiqyshhnnifhpliikttktsnilhlv*
Translated Amino Acid sequence (All Frames) 
Frame A:
---n*plkvldnststlvlnkvnlkf*pistkpslslnplfsvtpversig*qak*pnkn
spshqltvtkrivmvsyklsvlvllvsssppis*lvvlmsnkyhslstliyqptlkitfi
vsvvqvvsvvrvlpstlsltlkevksmnylvitiptlpkchktlevsskrvpkmvyssvg
phlvraigfinrpppslsnthttttyfirsl*kqqklqifytsfn


Frame B:
---inp*ry*tilrqrwc*tr*i*sfnrslrnplyhsiryfl*hp*kgrlvnkqndrtki
hrlinsr*pkgs*wyltsfpfwcyscphhhrslsswy*cptsitryql*ftnqh*klhss
yrsfrsfrs*gcchqlyh*r*krsnr*iisslqylhcrnatrhwkfplnefqkwfivqlv
piw*gp*gl*idrpppypiltpqqhissahyknnknfkyftprl


Frame C:
---LTLEGIRQFYVNVGVEQGKFEVLTDLYETLSITQSVIFCNTRRKVDWLTSKMTEQKF
TVSSTHGDQKDRDGILQAFRSGATRVLITTDLLARGIDVQQVSLVINFDLPTNIENYIHR
IGRSGRFGRKGVAINFITDAERGQIDELSRHYNTYIAEMPQDIGSFL*tsskngl*fsws
pfgeghrvykstaplpiqyshhnnifhpliikttktsnilhlv*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE196 (SLE196Q) /CSM/SL/SLE1-D/SLE196Q.Seq.d/                       1322   0.0
SLE749 (SLE749Q) /CSM/SL/SLE7-C/SLE749Q.Seq.d/                       1306   0.0
SLE712 (SLE712Q) /CSM/SL/SLE7-A/SLE712Q.Seq.d/                       1306   0.0
SLE190 (SLE190Q) /CSM/SL/SLE1-D/SLE190Q.Seq.d/                       1306   0.0
SLB444 (SLB444Q) /CSM/SL/SLB4-B/SLB444Q.Seq.d/                       1306   0.0
SLA160 (SLA160Q) /CSM/SL/SLA1-C/SLA160Q.Seq.d/                       1306   0.0
CHC333 (CHC333Q) /CSM/CH/CHC3-B/CHC333Q.Seq.d/                       1298   0.0
CFH852 (CFH852Q) /CSM/CF/CFH8-C/CFH852Q.Seq.d/                       1298   0.0
VFB309 (VFB309Q) /CSM/VF/VFB3-A/VFB309Q.Seq.d/                       1296   0.0
CFJ156 (CFJ156Q) /CSM/CF/CFJ1-C/CFJ156Q.Seq.d/                       1296   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034693) Dictyostelium discoideum slug cDNA, clone SLE196.     1320   0.0    1
(AU052168) Dictyostelium discoideum slug cDNA, clone SLA160.     1304   0.0    1
(AU039560) Dictyostelium discoideum slug cDNA, clone SLE749.     1304   0.0    1
(AU039535) Dictyostelium discoideum slug cDNA, clone SLE712.     1304   0.0    1
(AU034688) Dictyostelium discoideum slug cDNA, clone SLE190.     1304   0.0    1
(AU033792) Dictyostelium discoideum slug cDNA, clone SLB444.     1304   0.0    1
(BJ377872) Dictyostelium discoideum cDNA clone:ddc26b09, 3' ...  1296   0.0    1
(BJ374868) Dictyostelium discoideum cDNA clone:ddc16h14, 3' ...  1296   0.0    1
(BJ429300) Dictyostelium discoideum cDNA clone:ddv3b03, 3' e...  1294   0.0    1
(BJ375712) Dictyostelium discoideum cDNA clone:ddc19o13, 3' ...  1294   0.0    1
dna update 2009. 3.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78759_1(U78759|pid:none) Dictyostelium discoideum IfdA (ifdA) m...   328   9e-89
AJ320155_1(AJ320155|pid:none) Toxoplasma gondii mRNA for eukaryo...   235   1e-60
DQ667140_1(DQ667140|pid:none) Callinectes sapidus eukaryotic ini...   231   1e-59
DQ440212_1(DQ440212|pid:none) Aedes aegypti clone AET-2104 initi...   228   9e-59
(A5DVM3) RecName: Full=ATP-dependent RNA helicase eIF4A;        ...   226   4e-58
CP001142_274(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   226   5e-58
(P27639) RecName: Full=Eukaryotic initiation factor 4A;         ...   226   6e-58
BC049427_1(BC049427|pid:none) Danio rerio eukaryotic translation...   225   8e-58
BC048899_1(BC048899|pid:none) Danio rerio eukaryotic translation...   224   1e-57
AB060830_2(AB060830|pid:none) Macaca fascicularis brain cDNA clo...   224   1e-57
protein update 2009. 6. 3
PSORT 

 psg: 0.78  gvh: 0.50  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SLE196 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE196Z
3' end seq. 
>SLE196Z.Seq
----------GAATTAACCCTTGAAGGTATTAGACAATTCTACGTCAACGTTGGTGTTGA
ACAAGGTAAATTTGAAGTTTTAACCGATCTCTACGAAACCCTCTCTATCACTCAATCCGT
TATTTTCTGTAACACCCGTAGAAAGGTCGATTGGTTAACAAGCAAAATGACCGAACAAAA
ATTCACCGTCTCATCAACTCACGGTGACCAAAAGGATCGTGATGGTATCTTACAAGCTTT
CCGTTCTGGTGCTACTCGTGTCCTCATCACCACCGATCTCTTAGCTCGTGGTATTGATGT
CCAACAAGTATCACTCGTTATCAACTTTGATTTACCAACCAACATTGAAAATTACATTCA
TCGTATCGGTCGTTCAGGTCGTTTCGGTCGTAAGGGTGTTGCCATCAACTTTATCACTGA
CGCTGAAAGAGGTCAAATCGATGAATTATCTCGTCATTACAATACCTACATTGCCGAAAT
GCCACAAGACATTGGAAGTTTCCTCTAAACGAGTTCCAAAAATGGTTTATAGTTCAGTTG
GTCCCCATTTGGTGAGGGCCATAGGGTTTATAAATCGACCGCCCCCCTCCCTATCCAATA
CTCACACCACAACAACATATTTCATCCGCTCATTATAAAAACAACAAAAACTTCAAATAT
TTTACACCTCGTTTAAT
Length of 3' end seq. 667
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -