SLE182
Library SL
(Link to library)
Clone ID SLE182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16709-1
Original site URL
Representative seq. ID SLE182Z
(Link to Original site)
Representative DNA sequence
>SLE182 (SLE182Q) /CSM/SL/SLE1-D/SLE182Q.Seq.d/
XXXXXXXXXXCACACTCCTTCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCTT
TTTACATTTCAGCTATTATTCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATA
TCGCTTTACAAATACCACAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCA
CTGGTTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAG
GTTGGTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTG
AATTACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTA
TCTTTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAA
ATGGTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTG
TAACTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATA
ATAACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAAT
CAATTTAAAAATAAAAACACTTTGTATTTTATATTAAGAA
sequence update 1998. 5.18
Translated Amino Acid sequence
---TLLRRMGTGMFLSVIAFYISAIIQVHIDNSPPESVHIALQIPQYVVLTAAEVLLSIT
GLEFAYANSPRSMKSLVIAGWLICVSIGNMFDAFVIELIELPEYVLSLLFGSVMFVFIFI
FIIIAYRFKEIDQSVLDELNGDTPMTDDNANANSKELDVVTQKDLSSSSNPIINNNNNNN
NSTLGNSIDYGYDHEKSN*si*k*khfvfyik


Translated Amino Acid sequence (All Frames)
Frame A:
---TLLRRMGTGMFLSVIAFYISAIIQVHIDNSPPESVHIALQIPQYVVLTAAEVLLSIT
GLEFAYANSPRSMKSLVIAGWLICVSIGNMFDAFVIELIELPEYVLSLLFGSVMFVFIFI
FIIIAYRFKEIDQSVLDELNGDTPMTDDNANANSKELDVVTQKDLSSSSNPIINNNNNNN
NSTLGNSIDYGYDHEKSN*si*k*khfvfyik


Frame B:
---hsfvewvpvcfcl*llftfqllfkfilitlhqnlyislykyhnmls*lplkfyyqsl
v*nlpmqihhvl*nhw*lqvg*fvfplviclmll*ln*lnyqnmfyhyylvl*clyssls
lsllpidskklinqfwmn*mvilq*lmimlmlipkn*ml*lkkiyhllqiqlliiitiii
tqlwvivlimvmimknqinqfknkntlyfilr


Frame C:
---tps*ngyryvfvcdcflhfsyysssy**lstrictyrftntticcldcr*sfiinhw
friclckfttfyeiigncrlvnlcfhw*yv*cfcn*in*itricfiiiiwfcnvcihlyl
yhycl*iqrn*sisfg*ikw*ysnd***c*c*fqrirccnskrfiiffksny****q***
lnfg**y*lwl*s*kiklinlkiktlcily*e


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE182 (SLE182Q) /CSM/SL/SLE1-D/SLE182Q.Seq.d/ 1011 0.0
VFG511 (VFG511Q) /CSM/VF/VFG5-A/VFG511Q.Seq.d/ 1003 0.0
VFG459 (VFG459Q) /CSM/VF/VFG4-C/VFG459Q.Seq.d/ 1003 0.0
VFA693 (VFA693Q) /CSM/VF/VFA6-D/VFA693Q.Seq.d/ 1003 0.0
SSL138 (SSL138Q) /CSM/SS/SSL1-B/SSL138Q.Seq.d/ 1003 0.0
SSK896 (SSK896Q) /CSM/SS/SSK8-D/SSK896Q.Seq.d/ 1003 0.0
SSJ806 (SSJ806Q) /CSM/SS/SSJ8-A/SSJ806Q.Seq.d/ 1003 0.0
SSI451 (SSI451Q) /CSM/SS/SSI4-C/SSI451Q.Seq.d/ 1003 0.0
SSF437 (SSF437Q) /CSM/SS/SSF4-B/SSF437Q.Seq.d/ 1003 0.0
SSD187 (SSD187Q) /CSM/SS/SSD1-D/SSD187Q.Seq.d/ 1003 0.0

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence. 1003 0.0 3
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 141 1e-45 10
BU496155|BU496155.1 PfESToac04e11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence. 44 6e-04 2
AE016746|AE016746.1 Staphylococcus epidermidis ATCC 12228, section 3 of 9 of the complete genome. 38 0.001 10
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 38 0.002 8
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 34 0.004 21
CB073465|CB073465.1 taa18c12.x1 Hydra EST -II Hydra magnipapillata cDNA 3' similar to SW:OPT1_CAEEL Q17758 HYPOTHETICAL OLIGOPEPTIDE TRANSPORTER C06G8.2. [2] TR:O76185 ;, mRNA sequence. 40 0.004 3
AE014849|AE014849.1 Plasmodium falciparum 3D7 chromosome 12, section 6 of 9 of the complete sequence. 40 0.006 2
AC005507|AC005507.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 40 0.007 2
BX470120|BX470120.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-11I16. 38 0.009 6
dna update 2004. 3. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115680_27(AC115680|pid:none) Dictyostelium discoideum chromoso... 310 2e-83
CP000769_400(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, co... 92 9e-18
BC124581_1(BC124581|pid:none) Danio rerio solute carrier family ... 89 1e-16
BX548071_2(BX548071|pid:none) Zebrafish DNA sequence from clone ... 89 1e-16
AY029615_1(AY029615|pid:none) Gallus gallus peptide transporter ... 85 2e-15
CP001032_1516(CP001032|pid:none) Opitutus terrae PB90-1, complet... 84 4e-15
AY094847_1(AY094847|pid:none) Drosophila melanogaster RE06505 fu... 83 6e-15
AE014297_1025(AE014297|pid:none) Drosophila melanogaster chromos... 83 6e-15
AB455540_1(AB455540|pid:none) Salmo salar PepT1 mRNA for solute ... 83 7e-15
AY157977_1(AY157977|pid:none) Meleagris gallopavo peptide transp... 83 7e-15
protein update 2009. 6. 3
PSORT

psg: 0.98 gvh: 0.54 alm: 0.11 top: 0.27 tms: 0.27 mit: 0.44 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
32.0 %: plasma membrane
16.0 %: mitochondrial
8.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: nuclear

>> prediction for SLE182 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE182Z
3' end seq.
>SLE182Z.Seq
----------CACACTCCTTCGTAGAATGGGTACCGGTATGTTTTTGTCTGTGATTGCTT
TTTACATTTCAGCTATTATTCAAGTTCATATTGATAACTCTCCACCAGAATCTGTACATA
TCGCTTTACAAATACCACAATATGTTGTCTTGACTGCCGCTGAAGTTTTATTATCAATCA
CTGGTTTAGAATTTGCCTATGCAAATTCACCACGTTCTATGAAATCATTGGTAATTGCAG
GTTGGTTAATTTGTGTTTCCATTGGTAATATGTTTGATGCTTTTGTAATTGAATTAATTG
AATTACCAGAATATGTTTTATCATTATTATTTGGTTCTGTAATGTTTGTATTCATCTTTA
TCTTTATCATTATTGCCTATAGATTCAAAGAAATTGATCAATCAGTTTTGGATGAATTAA
ATGGTGATACTCCAATGACTGATGATAATGCTAATGCTAATTCCAAAGAATTAGATGTTG
TAACTCAAAAAGATTTATCATCTTCTTCAAATCCAATTATTAATAATAATAACAATAATA
ATAACTCAACTTTGGGTAATAGTATTGATTATGGTTATGATCATGAAAAATCAAATTAAT
CAATTTAAAAATAAAAACACTTTGTATTTTATATTAAGAA
Length of 3' end seq. 630
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -