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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE181
Library SL
(Link to library)
Clone ID SLE181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLE181Z
(Link to Original site)
Representative DNA sequence 
>SLE181 (SLE181Q) /CSM/SL/SLE1-D/SLE181Q.Seq.d/
XXXXXXXXXXCCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCC
CGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGA
AACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACC
GGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCAC
TACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAG
AGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAA
ATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCT
GAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAA
TAAATTAGATTTCAGAGAGTTATCAAACATAATATAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
sequence update 1998. 5.18
Translated Amino Acid sequence 
---HKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTG
KTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKI
TLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhnikkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---p*rfkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*tnlnr
*d*irfn*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccpren
hsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*isesyqt*ykkkkkkkkk


Frame B:
---HKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTG
KTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKI
TLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSRSTKA*iq*irfqrvikhnikkkkkkkkk


Frame C:
---ikv*erlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnksqpv
rlnsi*lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervsplklvvlpsrks
lsnssippaslvtvfikplkirlnisasrnqdqlrlkfnkldfrelsnii*kkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI645 (VFI645Q) /CSM/VF/VFI6-B/VFI645Q.Seq.d/                       1001   0.0
VFF813 (VFF813Q) /CSM/VF/VFF8-A/VFF813Q.Seq.d/                       1001   0.0
SLI430 (SLI430Q) /CSM/SL/SLI4-B/SLI430Q.Seq.d/                       1001   0.0
SLH735 (SLH735Q) /CSM/SL/SLH7-B/SLH735Q.Seq.d/                       1001   0.0
SLH105 (SLH105Q) /CSM/SL/SLH1-A/SLH105Q.Seq.d/                       1001   0.0
SLE181 (SLE181Q) /CSM/SL/SLE1-D/SLE181Q.Seq.d/                       1001   0.0
SLB430 (SLB430Q) /CSM/SL/SLB4-B/SLB430Q.Seq.d/                       1001   0.0
SLB755 (SLB755Q) /CSM/SL/SLB7-C/SLB755Q.Seq.d/                        999   0.0
SLB122 (SLB122Q) /CSM/SL/SLB1-A/SLB122Q.Seq.d/                        997   0.0
VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                        995   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU053342) Dictyostelium discoideum slug cDNA, clone SLI430.     1001   0.0    1
(AU039411) Dictyostelium discoideum slug cDNA, clone SLH735.     1001   0.0    1
(AU039193) Dictyostelium discoideum slug cDNA, clone SLH105.     1001   0.0    1
(AU034682) Dictyostelium discoideum slug cDNA, clone SLE181.     1001   0.0    1
(AU033780) Dictyostelium discoideum slug cDNA, clone SLB430.     1001   0.0    1
(BJ432325) Dictyostelium discoideum cDNA clone:ddv18i12, 3' ...  1001   0.0    1
(BJ428484) Dictyostelium discoideum cDNA clone:ddv12j04, 3' ...  1001   0.0    1
(AU034111) Dictyostelium discoideum slug cDNA, clone SLB755.      999   0.0    1
(AU033517) Dictyostelium discoideum slug cDNA, clone SLB122.      997   0.0    1
(AU268249) Dictyostelium discoideum vegetative cDNA clone:VS...   995   0.0    1
dna update 2009. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   314   8e-85
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   205   7e-52
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   203   2e-51
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...   202   4e-51
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   201   8e-51
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   201   8e-51
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...   201   1e-50
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   199   3e-50
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM...   199   4e-50
BT036034_1(BT036034|pid:none) Zea mays full-length cDNA clone ZM...   199   4e-50
protein update 2009. 6. 3
PSORT 

 psg: 0.87  gvh: 0.43  alm: 0.51  top: 0.40  tms: 0.00  mit: 0.49  mip: 0.08
 nuc: 0.09  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SLE181 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE181Z
3' end seq. 
>SLE181Z.Seq
----------CCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCC
CGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGA
AACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACC
GGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCAC
TACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAG
AGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAA
ATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCT
GAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAA
TAAATTAGATTTCAGAGAGTTATCAAACATAATATAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA
Length of 3' end seq. 534
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -