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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE173
Library SL
(Link to library)
Clone ID SLE173
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13955-1
Original site URL
Representative seq. ID SLE173E
(Link to Original site)
Representative DNA sequence 
>SLE173 (SLE173Q) /CSM/SL/SLE1-D/SLE173Q.Seq.d/
AGAATCTGCTCAAAAACAAGCTCAAGCATTACTAATTACTGCTGAAGCTCAAAAGAAAGT
TCAAGAAATGCAAGGTGAATTATTTACAAAATATCCAATTCTCGCTGAAATTGAATTGGC
TAAAATTAAATCAGAAGCTCTTAAAAGTGCAACACTTTATATTACTTTTCAAGATGCTGG
TAACTTTATGAATTCACCATTGGTTTATATGGATAGATTACTTGGACACCAACAAAAATT
AGAAAAATAATTAAATTCAATTAAATAATAATATTATTAATAATTAAAATAATAATAATA
ACGATAAAAATAGTGATATGTATATATATGTAATTAATTTATTAAACAAAAGTATTTTTT
ATTTTCTAAATTTCAATAAATCTTTTTTTTTTTTAAGATATAAAAAA
sequence update 1998. 5.18
Translated Amino Acid sequence 
ESAQKQAQALLITAEAQKKVQEMQGELFTKYPILAEIELAKIKSEALKSATLYITFQDAG
NFMNSPLVYMDRLLGHQQKLEK*lnsik**yy**lk****r*k**yvyicn*fikqkyfl
fskfq*iffffki*k
Translated Amino Acid sequence (All Frames) 
Frame A:
ricsktsssitnyc*sskessrnar*iiykisnsr*n*ig*n*irss*kcntlyyfsrcw
*lyeftiglyg*itwtptkirkiikfn*iiilliikiiiitikiviciym*liy*tkvff
if*isinlfff*dik


Frame B:
ESAQKQAQALLITAEAQKKVQEMQGELFTKYPILAEIELAKIKSEALKSATLYITFQDAG
NFMNSPLVYMDRLLGHQQKLEK*lnsik**yy**lk****r*k**yvyicn*fikqkyfl
fskfq*iffffki*k


Frame C:
nllknklkhy*lllklkrkfkkckvnylqniqfslklnwlklnqkllkvqhfillfkmlv
tl*ihhwfiwidyldtnkn*knn*iqlnnniinn*nnnnndknsdmyiyvinllnksify
flnfnksffflrykk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE173 (SLE173Q) /CSM/SL/SLE1-D/SLE173Q.Seq.d/                        462   e-129
AFM543 (AFM543Q) /CSM/AF/AFM5-B/AFM543Q.Seq.d/                        351   5e-96
SSM704 (SSM704Q) /CSM/SS/SSM7-A/SSM704Q.Seq.d/                        224   8e-58
SSM136 (SSM136Q) /CSM/SS/SSM1-B/SSM136Q.Seq.d/                        224   8e-58
SSK123 (SSK123Q) /CSM/SS/SSK1-A/SSK123Q.Seq.d/                        224   8e-58
SSD350 (SSD350Q) /CSM/SS/SSD3-C/SSD350Q.Seq.d/                        224   8e-58
SSL779 (SSL779Q) /CSM/SS/SSL7-D/SSL779Q.Seq.d/                        167   2e-40
SFJ283 (SFJ283Q) /CSM/SF/SFJ2-D/SFJ283Q.Seq.d/                        103   2e-21
SFB121 (SFB121Q) /CSM/SF/SFB1-A/SFB121Q.Seq.d/                        103   2e-21
VHM373 (VHM373Q) /CSM/VH/VHM3-D/VHM373Q.Seq.d/                         90   3e-17
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034678) Dictyostelium discoideum slug cDNA, clone SLE173.      462   e-126  2
(AF014050) Dictyostelium discoideum vacuolin B (vac B) mRNA,...   446   e-121  1
(BJ347162) Dictyostelium discoideum cDNA clone:dda26e11, 3' ...   274   2e-92  2
(AU038916) Dictyostelium discoideum slug cDNA, clone SSM136.      224   2e-54  1
(C93365) Dictyostelium discoideum slug cDNA, clone SSM704.        224   2e-54  1
(C91359) Dictyostelium discoideum slug cDNA, clone SSK123.        224   2e-54  1
(C93843) Dictyostelium discoideum slug cDNA, clone SSL779.        167   4e-37  1
(AF014049) Dictyostelium discoideum vacuolin A (vac A) mRNA,...    88   3e-21  2
(BJ401909) Dictyostelium discoideum cDNA clone:dds19e22, 3' ...    88   3e-21  2
(BJ398917) Dictyostelium discoideum cDNA clone:dds3i05, 3' e...    88   3e-21  2
dna update 2009. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54WZ2) RecName: Full=Vacuolin-B;                                    155   5e-37
AF014050_1(AF014050|pid:none) Dictyostelium discoideum vacuolin ...   155   5e-37
(Q54WZ3) RecName: Full=Vacuolin-C;                                    125   6e-28
CP001390_3492(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    33   4.1
AM910996_670(AM910996|pid:none) Plasmodium knowlesi strain H chr...    32   7.0
protein update 2009. 3. 4
PSORT 

 psg: 0.86  gvh: 0.37  alm: 0.52  top: 0.40  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoskeletal
	 24.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SLE173 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE173E
Full length Seq. 
>SLE173E.Seq
AGAATCTGCTCAAAAACAAGCTCAAGCATTACTAATTACTGCTGAAGCTCAAAAGAAAGT
TCAAGAAATGCAAGGTGAATTATTTACAAAATATCCAATTCTCGCTGAAATTGAATTGGC
TAAAATTAAATCAGAAGCTCTTAAAAGTGCAACACTTTATATTACTTTTCAAGATGCTGG
TAACTTTATGAATTCACCATTGGTTTATATGGATAGATTACTTGGACACCAACAAAAATT
AGAAAAATAATTAAATTCAATTAAATAATAATATTATTAATAATTAAAATAATAATAATA
ACGATAAAAATAGTGATATGTATATATATGTAATTAATTTATTAAACAAAAGTATTTTTT
ATTTTCTAAATTTCAATAAATCTTTTTTTTTTTTAAGATATAAAAAA
Length of full length seq. 407