SLE172
Library SL
(Link to library)
Clone ID SLE172
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11049-1
Original site URL
Representative seq. ID SLE172E
(Link to Original site)
Representative DNA sequence
>SLE172 (SLE172Q) /CSM/SL/SLE1-C/SLE172Q.Seq.d/
AAGAAAAGCATTACTCAACAATAAGAAAGAAGCTAAACCAGAGAGACCATGGACTGAAGA
TGAACTCCATCTCTTGGCTAAAGCCATCCAAAAGTTCCCACCAGGTGTTACCAAACGTTG
GGAATCCGTTGCATCTTGTATTCCAACTCGTTCTTTGAAAGACGTTATCGCCAAAGCTAA
AACCTCACAACCAACTCAACAACAATCTTTCTCAAAACCAGAAGCTGCTCCATCAGGTTC
CGATTATGATAAATTAAAAGCCAAAGTTGGTCATATGGAAATTAAATCTGAACTCAGTTC
AAAAGTTGACCTCGGTCAATATCCAGTAGGTACCACTTCAAATGGCACTGAATCAACCAC
TACCGCCACCGCTCCATCAACTGTCGACACCGCCAAACCAGCCGCTAAAAAAGAAACTAC
CACTACCACTGCCTCTGTTGAATGGACACCAGAAGAACAAAAACTCTTGGAAGAAGCTTT
ACAAAAAGTCGATAAAAATGCTGAAGATCGTTGGGATCAAATCGCAGCTCGTCTCGGTAC
TAAATCTAAAAAAGATTGTGTTGCTCGTTTCAAATATTTAGCTACTATGGTTAAAAATAT
CCAACCAACTAAATAAGTTAAATATTAAAAAA
sequence update 1998. 5.18
Translated Amino Acid sequence
RKALLNNKKEAKPERPWTEDELHLLAKAIQKFPPGVTKRWESVASCIPTRSLKDVIAKAK
TSQPTQQQSFSKPEAAPSGSDYDKLKAKVGHMEIKSELSSKVDLGQYPVGTTSNGTESTT
TATAPSTVDTAKPAAKKETTTTTASVEWTPEEQKLLEEALQKVDKNAEDRWDQIAARLGT
KSKKDCVARFKYLATMVKNIQPTK*vky*k


Translated Amino Acid sequence (All Frames)
Frame A:
kksitqq*ers*tretmd*r*tpslg*shpkvptrcyqtlgircilysnsfferryrqs*
nlttnsttiflktrscsirfrl**iksqswsygn*i*tqfks*prsissryhfkwh*inh
yrhrsincrhrqtsr*krnyhyhclc*mdtrrtktlgrsftksr*kc*rslgsnrsssry
*i*krlccsfqifsyyg*kyptn*is*ilk


Frame B:
RKALLNNKKEAKPERPWTEDELHLLAKAIQKFPPGVTKRWESVASCIPTRSLKDVIAKAK
TSQPTQQQSFSKPEAAPSGSDYDKLKAKVGHMEIKSELSSKVDLGQYPVGTTSNGTESTT
TATAPSTVDTAKPAAKKETTTTTASVEWTPEEQKLLEEALQKVDKNAEDRWDQIAARLGT
KSKKDCVARFKYLATMVKNIQPTK*vky*k


Frame C:
ekhystirkklnqrdhglkmnsiswlkpsksshqvlpnvgnplhlvfqlvl*ktlspklk
phnqlnnnlsqnqkllhqvpimin*kpklviwklnlnsvqkltsvniq*vplqmalnqpl
ppplhqlstppnqplkkklplplpllnghqknknswkklykksikmlkivgiksqlvsvl
nlkkivllvsni*llwlkisnqlnklnikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE172 (SLE172Q) /CSM/SL/SLE1-C/SLE172Q.Seq.d/ 1253 0.0
AFN547 (AFN547Q) /CSM/AF/AFN5-B/AFN547Q.Seq.d/ 1126 0.0
VHJ195 (VHJ195Q) /CSM/VH/VHJ1-D/VHJ195Q.Seq.d/ 1102 0.0
SLD492 (SLD492Q) /CSM/SL/SLD4-D/SLD492Q.Seq.d/ 817 0.0
SLA508 (SLA508Q) /CSM/SL/SLA5-A/SLA508Q.Seq.d/ 509 e-143
SLD569 (SLD569Q) /CSM/SL/SLD5-C/SLD569Q.Seq.d/ 256 4e-67
VSK435 (VSK435Q) /CSM/VS/VSK4-B/VSK435Q.Seq.d/ 38 0.16
VFI629 (VFI629Q) /CSM/VF/VFI6-B/VFI629Q.Seq.d/ 38 0.16
VFH676 (VFH676Q) /CSM/VF/VFH6-D/VFH676Q.Seq.d/ 38 0.16
SHC413 (SHC413Q) /CSM/SH/SHC4-A/SHC413Q.Seq.d/ 38 0.16

own update 2004. 5.31
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU034677) Dictyostelium discoideum slug cDNA, clone SLE172. 1253 0.0 1
(BJ345667) Dictyostelium discoideum cDNA clone:dda28m11, 3' ... 1112 0.0 2
(BJ442455) Dictyostelium discoideum cDNA clone:ddv49m23, 3' ... 1102 0.0 1
(AU052538) Dictyostelium discoideum slug cDNA, clone SLD492. 817 0.0 1
(C83939) Dictyostelium discoideum slug cDNA, clone SLA508. 502 e-138 1
(AU052597) Dictyostelium discoideum slug cDNA, clone SLD569. 256 9e-64 1
(DU286547) 1098448336907 CHORI-243 Ovis aries genomic clone ... 44 0.047 2
(CC853718) NDL.33A17.SP6 Notre Dame Liverpool Aedes aegypti ... 44 0.22 2
(DU965149) 235372 Tomato MboI BAC Library Solanum lycopersic... 48 0.40 1
(BH765106) BMBAC353F10T7_PSU Brugia malayi Genomic Bac Libra... 48 0.40 1
dna update 2009. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54103) RecName: Full=DnaJ homolog subfamily C member 2; AltNam... 63 8e-09
AY322164_1(AY322164|pid:none) Rattus norvegicus zuotin related f... 62 2e-08
(Q7TQ20) RecName: Full=DnaJ homolog subfamily C member 2; AltNam... 62 2e-08
BC125057_1(BC125057|pid:none) Homo sapiens DnaJ (Hsp40) homolog,... 59 9e-08
BC000859_1(BC000859|pid:none) Homo sapiens DnaJ (Hsp40) homolog,... 59 9e-08
(Q99543) RecName: Full=DnaJ homolog subfamily C member 2; AltNam... 59 9e-08
(Q1RMH9) RecName: Full=DnaJ homolog subfamily C member 2; AltNam... 59 1e-07
AC145329_5(AC145329|pid:none) Medicago truncatula clone mth2-8i2... 59 2e-07
BC139751_1(BC139751|pid:none) Homo sapiens DnaJ (Hsp40) homolog,... 58 2e-07
AL731623_10(AL731623|pid:none) Oryza sativa genomic DNA, chromos... 56 7e-07
protein update 2009. 7. 5
PSORT

psg: 0.50 gvh: 0.41 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
28.0 %: mitochondrial
28.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for SLE172 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE172E
Full length Seq.
>SLE172E.Seq
AAGAAAAGCATTACTCAACAATAAGAAAGAAGCTAAACCAGAGAGACCATGGACTGAAGA
TGAACTCCATCTCTTGGCTAAAGCCATCCAAAAGTTCCCACCAGGTGTTACCAAACGTTG
GGAATCCGTTGCATCTTGTATTCCAACTCGTTCTTTGAAAGACGTTATCGCCAAAGCTAA
AACCTCACAACCAACTCAACAACAATCTTTCTCAAAACCAGAAGCTGCTCCATCAGGTTC
CGATTATGATAAATTAAAAGCCAAAGTTGGTCATATGGAAATTAAATCTGAACTCAGTTC
AAAAGTTGACCTCGGTCAATATCCAGTAGGTACCACTTCAAATGGCACTGAATCAACCAC
TACCGCCACCGCTCCATCAACTGTCGACACCGCCAAACCAGCCGCTAAAAAAGAAACTAC
CACTACCACTGCCTCTGTTGAATGGACACCAGAAGAACAAAAACTCTTGGAAGAAGCTTT
ACAAAAAGTCGATAAAAATGCTGAAGATCGTTGGGATCAAATCGCAGCTCGTCTCGGTAC
TAAATCTAAAAAAGATTGTGTTGCTCGTTTCAAATATTTAGCTACTATGGTTAAAAATAT
CCAACCAACTAAATAAGTTAAATATTAAAAAA
Length of full length seq. 632