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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE149
Library SL
(Link to library)
Clone ID SLE149
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SLE149Z
(Link to Original site)
Representative DNA sequence 
>SLE149 (SLE149Q) /CSM/SL/SLE1-C/SLE149Q.Seq.d/
XXXXXXXXXXGTCATACGAATTACCAGACGGTCAAGTTATCACCATCGGTAATGAACGTT
TCCGTTGCCCAGAAGCCCTCTTCCAACCATCAGTCTTAGGTATGGAATCAGCTGGTATCC
ACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACG
GTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACA
AAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCCCCACCAGAAC
GTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAA
TGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTT
TCTAAACAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACAAACAATTATGTAAAATA
TATAATAAAATACATTATTTAATCATTTTTATTAATTTTGTTTTAGTTGTTGATCTTTAT
CCGACTATTTAAAATTAATTGTAAAA
sequence update 1998. 5.18
Translated Amino Acid sequence 
---SYELPDGQVITIGNERFRCPEALFQPSVLGMESAGIHETTYNSIMKCDVDIRKDLYG
NVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
WISKEEYDESGPSIVHRKCF*tnn*n***kcfsqtim*ni**ntlfnhfy*fcfsc*sls
dylklivk
Translated Amino Acid sequence (All Frames) 
Frame A:
---SYELPDGQVITIGNERFRCPEALFQPSVLGMESAGIHETTYNSIMKCDVDIRKDLYG
NVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQM
WISKEEYDESGPSIVHRKCF*tnn*n***kcfsqtim*ni**ntlfnhfy*fcfsc*sls
dylklivk


Frame B:
---htnyqtvklspsvmnvsvaqkpssnhqs*vwnqlvstkppttps*nvmlisvkiytv
mssylvvqlcsqvlliv*tkn*ll*phqp*klkslphqnvntlsglvdls*lhsqlsnkc
gspkknmtnqvhqlstenvskqtiktsdesashkqlckiynkihyliifinfvlvvdlyp
ti*n*l*


Frame C:
---iritrrssyhhr**tfplprsplptislrygiswyprnhlqlhhem*c*yp*rfir*
crliwwynyvpryc*syeqrincfspinhen*nhcptrt*ilcldwwiylsftlnfptnv
dlqrri*rirsincpqkmflnkqlklvmkvlltnnyvkyiikyii*sfllilf*llifir
lfkinck
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE149 (SLE149Q) /CSM/SL/SLE1-C/SLE149Q.Seq.d/                       1102   0.0
SLA720 (SLA720Q) /CSM/SL/SLA7-A/SLA720Q.Seq.d/                       1090   0.0
SLE101 (SLE101Q) /CSM/SL/SLE1-A/SLE101Q.Seq.d/                       1086   0.0
SLB790 (SLB790Q) /CSM/SL/SLB7-D/SLB790Q.Seq.d/                       1076   0.0
CHE469 (CHE469Q) /CSM/CH/CHE4-C/CHE469Q.Seq.d/                       1021   0.0
VFE354 (VFE354Q) /CSM/VF/VFE3-C/VFE354Q.Seq.d/                       1015   0.0
VFB865 (VFB865Q) /CSM/VF/VFB8-C/VFB865Q.Seq.d/                       1013   0.0
VFM523 (VFM523Q) /CSM/VF/VFM5-A/VFM523Q.Seq.d/                       1009   0.0
VFN575 (VFN575Q) /CSM/VF/VFN5-D/VFN575Q.Seq.d/                       1001   0.0
VFN265 (VFN265Q) /CSM/VF/VFN2-C/VFN265Q.Seq.d/                        997   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034663) Dictyostelium discoideum slug cDNA, clone SLE149.     1100   0.0    1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...  1092   0.0    1
(AU033397) Dictyostelium discoideum slug cDNA, clone SLA720.     1090   0.0    1
(AU034638) Dictyostelium discoideum slug cDNA, clone SLE101.     1086   0.0    1
(AU034141) Dictyostelium discoideum slug cDNA, clone SLB790.     1076   0.0    1
(BJ376926) Dictyostelium discoideum cDNA clone:ddc30j18, 3' ...  1021   0.0    1
(BJ431034) Dictyostelium discoideum cDNA clone:ddv9l13, 3' e...   997   0.0    3
(BJ435124) Dictyostelium discoideum cDNA clone:ddv26m05, 3' ...  1009   0.0    1
(BJ429674) Dictyostelium discoideum cDNA clone:ddv4b18, 3' e...  1007   0.0    1
(BJ435879) Dictyostelium discoideum cDNA clone:ddv28e19, 3' ...  1001   0.0    1
dna update 2009. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   279   4e-74
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   279   4e-74
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   279   4e-74
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        279   4e-74
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   276   2e-73
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   276   3e-73
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   273   2e-72
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   273   2e-72
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          273   2e-72
AY615868_1(AY615868|pid:none) Amastigomonas marina actin gene, p...   273   3e-72
protein update 2009. 6. 3
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SLE149 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLE149Z
3' end seq. 
>SLE149Z.Seq
----------GTCATACGAATTACCAGACGGTCAAGTTATCACCATCGGTAATGAACGTT
TCCGTTGCCCAGAAGCCCTCTTCCAACCATCAGTCTTAGGTATGGAATCAGCTGGTATCC
ACGAAACCACCTACAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACG
GTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACA
AAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCCCCACCAGAAC
GTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAA
TGTGGATCTCCAAAGAAGAATATGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTT
TCTAAACAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACAAACAATTATGTAAAATA
TATAATAAAATACATTATTTAATCATTTTTATTAATTTTGTTTTAGTTGTTGATCTTTAT
CCGACTATTTAAAATTAATTGTAAAA
Length of 3' end seq. 556
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -