SLE128
Library SL
(Link to library)
Clone ID SLE128
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15957-1
Original site URL
Representative seq. ID SLE128P
(Link to Original site)
Representative DNA sequence
>SLE128 (SLE128Q) /CSM/SL/SLE1-B/SLE128Q.Seq.d/
AAAATATAATTGGGATAAATTAATAAATGGTGAGAGTGGAATTAAAAGATTTGAAGGATT
TGAAGATAGTAGAATTGATTGCCCATCAAAAGTTGTAGCAAGAGTACCAAAAGGTGAAGG
TATAGGTGAGTTTAATTCAAATACTATGATACCATCACAAGTGAAATTGGCAAGCTCTGA
TTTCATAAAATATGCAATCGTTGCAACTGATGAAGCTATTAAAGATTCAAAACTAGATAA
ATTCATTGAATCAAATGAAAAACTTCAAGAAAGAATTGGAGTATGTATTGGTTCTGGTAC
AGGTTCAATGGAAGAAATTATCTCAGCAAATGAAAAGATTTCAAATAAATTAAATAACAA
TAACAATAACAGTGATAGTGGTAGTGGTAGTGGTAGTGGTGGTGGTGGTGGTAAAGTTTC
AGCATATTTTATACCAAAAATTTTAATTAATGAAGCATCTGGTATAATTAGTATTTTACA
TAAAGCGAAAGGACCTAATATGTCAATTGTTAGTGCATGTGCAACTGGGTCTCATTGTAT
TGGCGAATCATTTAGAAAGATAAAATATGGTGAAGTGGACGCAATGATATGTGGTGGTAC
TGAAGCGAGTATAAATTCAGTTTCAATGATTGGTTTCTCACGTATGAXXXXXXXXXXTTA
TAATAATAAAGAAATTATAATGAGCTCAAATAAAGGTTCAATTGGTCATTTGTTGGGTGC
TGCTGGAAGTGTTGAATCAATATTTTCAATTTTATCATTATATAATAATATTATACCACC
AACTTTAAATTTAGAAAATCCATCAAAAGATTNTCAGGGTATAAATTTAGTACAATTTAA
ATCTCAATCAAAACCAATTAGAAATGTTTTAAAAAATTCATTTGGATTTGGTGGAACAAA
TTGTTCTTTAATTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
sequence update 1999. 1.19
Translated Amino Acid sequence
KYNWDKLINGESGIKRFEGFEDSRIDCPSKVVARVPKGEGIGEFNSNTMIPSQVKLASSD
FIKYAIVATDEAIKDSKLDKFIESNEKLQERIGVCIGSGTGSMEEIISANEKISNKLNNN
NNNSDSGSGSGSGGGGGKVSAYFIPKILINEASGIISILHKAKGPNMSIVSACATGSHCI
GESFRKIKYGEVDAMICGGTEASINSVSMIGFSRM---

---YNNKEIIMSSNKGSIGHLLGAAGSVESIFSILSLYNNIIPPTLNLENPSKDXQGINL
VQFKSQSKPIRNVLKNSFGFGGTNCSLIFSKKKKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
ki*lg*inkw*ewn*ki*ri*r**n*lpikscskstkr*ryr*v*fkyydtitseigkl*
fhkicnrcn**sy*rfktr*ih*ik*ktsrknwsmywfwyrfngrnylsk*kdfk*ik*q
*q*q**w*w*w*wwwww*sfsifytknfn**siwyn*yft*sert*yvnc*cmcnwvsly
wrii*kdkiw*sgrndmwwy*seykfsfndwflty---

---l***rnynelk*rfnwsfvgccwkc*inifnfiii**yyttnfkfrksikrxsgykf
sti*isiktn*kcfkkfiwiwwnklffnffkkkkkkkkkkkkkk

Frame B:
KYNWDKLINGESGIKRFEGFEDSRIDCPSKVVARVPKGEGIGEFNSNTMIPSQVKLASSD
FIKYAIVATDEAIKDSKLDKFIESNEKLQERIGVCIGSGTGSMEEIISANEKISNKLNNN
NNNSDSGSGSGSGGGGGKVSAYFIPKILINEASGIISILHKAKGPNMSIVSACATGSHCI
GESFRKIKYGEVDAMICGGTEASINSVSMIGFSRM---

---YNNKEIIMSSNKGSIGHLLGAAGSVESIFSILSLYNNIIPPTLNLENPSKDXQGINL
VQFKSQSKPIRNVLKNSFGFGGTNCSLIFSKKKKKKKKKKKKKK

Frame C:
niigin**mvrvelkdlkdlkiveliahqkl*qeyqkvkv*vsliqil*yhhk*nwqali
s*nmqslqlmkllkiqn*inslnqmknfkkeleyvlvlvqvqwkklsqqmkrfqin*iti
titvivvvvvvvvvvvvkfqhilyqkf*lmkhlv*lvfyikrkdlicqllvhvqlglivl
anhler*nmvkwtq*yvvvlkrv*iqfq*lvshv*---

---iiikkl**aqikvqlvicwvllevlnqyfqfyhyiiilyhql*i*kihqkixrv*i*
ynlnlnqnqlemf*kihldlveqivl*ffqkkkkkkkkkkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLE128 (SLE128Q) /CSM/SL/SLE1-B/SLE128Q.Seq.d/ 938 0.0
FC-AE17 (FC-AE17Q) /CSM/FC/FC-AE/FC-AE17Q.Seq.d/ 507 e-143
SHC521 (SHC521Q) /CSM/SH/SHC5-A/SHC521Q.Seq.d/ 44 0.004
VHN316 (VHN316Q) /CSM/VH/VHN3-A/VHN316Q.Seq.d/ 42 0.016
VHM367 (VHM367Q) /CSM/VH/VHM3-C/VHM367Q.Seq.d/ 42 0.016
VHC677 (VHC677Q) /CSM/VH/VHC6-D/VHC677Q.Seq.d/ 42 0.016
SSM158 (SSM158Q) /CSM/SS/SSM1-C/SSM158Q.Seq.d/ 42 0.016
SSL714 (SSL714Q) /CSM/SS/SSL7-A/SSL714Q.Seq.d/ 42 0.016
SSL690 (SSL690Q) /CSM/SS/SSL6-D/SSL690Q.Seq.d/ 42 0.016
AHD244 (AHD244Q) /CSM/AH/AHD2-B/AHD244Q.Seq.d/ 42 0.016

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 743 0.0 2
(AU061406) Dictyostelium discoideum slug cDNA, clone SLE128. 743 0.0 2
(C23751) Dictyostelium discoideum gamete cDNA, clone FC-AE17. 313 0.0 6
(AU034650) Dictyostelium discoideum slug cDNA, clone SLE128. 511 e-140 1
(C23752) Dictyostelium discoideum gamete cDNA, clone FC-AE17. 507 e-139 1
(EJ789530) 1093017370256 Global-Ocean-Sampling_GS-30-02-01-1... 50 9e-16 4
(EJ809508) 1093017481550 Global-Ocean-Sampling_GS-30-02-01-1... 50 9e-16 4
(EK006783) 1092955107574 Global-Ocean-Sampling_GS-31-01-01-1... 70 9e-11 2
(EK140973) 1095454110843 Global-Ocean-Sampling_GS-31-01-01-1... 52 4e-09 2
(ER289028) 1092343589044 Global-Ocean-Sampling_GS-34-01-01-1... 56 1e-08 2
dna update 2009. 3.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT042423_1(BT042423|pid:none) Zea mays full-length cDNA clone ZM... 145 3e-33
CP000613_1527(CP000613|pid:none) Rhodospirillum centenum SW, com... 143 7e-33
BX897699_528(BX897699|pid:none) Bartonella henselae strain Houst... 140 6e-32
CU459003_1953(CU459003|pid:none) Magnetospirillum gryphiswaldens... 140 8e-32
(Q8L3X9) RecName: Full=3-oxoacyl-[acyl-carrier-protein] synthase... 138 3e-31
AM260525_724(AM260525|pid:none) Bartonella tribocorum CIP 105476... 137 4e-31
CP000524_475(CP000524|pid:none) Bartonella bacilliformis KC583, ... 137 5e-31
AC3436(AC3436) 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3... 137 5e-31
CP000758_572(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 137 5e-31
BX897700_446(BX897700|pid:none) Bartonella quintana str. Toulous... 137 7e-31
protein update 2009. 6. 2
PSORT

psg: 0.55 gvh: 0.30 alm: 0.35 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.44 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
12.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SLE128 is nuc

5' end seq. ID SLE128F
5' end seq.
>SLE128F.Seq
AAAATATAATTGGGATAAATTAATAAATGGTGAGAGTGGAATTAAAAGATTTGAAGGATT
TGAAGATAGTAGAATTGATTGCCCATCAAAAGTTGTAGCAAGAGTACCAAAAGGTGAAGG
TATAGGTGAGTTTAATTCAAATACTATGATACCATCACAAGTGAAATTGGCAAGCTCTGA
TTTCATAAAATATGCAATCGTTGCAACTGATGAAGCTATTAAAGATTCAAAACTAGATAA
ATTCATTGAATCAAATGAAAAACTTCAAGAAAGAATTGGAGTATGTATTGGTTCTGGTAC
AGGTTCAATGGAAGAAATTATCTCAGCAAATGAAAAGATTTCAAATAAATTAAATAACAA
TAACAATAACAGTGATAGTGGTAGTGGTAGTGGTAGTGGTGGTGGTGGTGGTAAAGTTTC
AGCATATTTTATACCAAAAATTTTAATTAATGAAGCATCTGGTATAATTAGTATTTTACA
TAAAGCGAAAGGACCTAATATGTCAATTGTTAGTGCATGTGCAACTGGGTCTCATTGTAT
TGGCGAATCATTTAGAAAGATAAAATATGGTGAAGTGGACGCAATGATATGTGGTGGTAC
TGAAGCGAGTATAAATTCAGTTTCAATGATTGGTTTCTCACGTATGA----------
Length of 5' end seq. 647
3' end seq. ID SLE128Z
3' end seq.
>SLE128Z.Seq
----------TTATAATAATAAAGAAATTATAATGAGCTCAAATAAAGGTTCAATTGGTC
ATTTGTTGGGTGCTGCTGGAAGTGTTGAATCAATATTTTCAATTTTATCATTATATAATA
ATATTATACCACCAACTTTAAATTTAGAAAATCCATCAAAAGATTNTCAGGGTATAAATT
TAGTACAATTTAAATCTCAATCAAAACCAATTAGAAATGTTTTAAAAAATTCATTTGGAT
TTGGTGGAACAAATTGTTCTTTAATTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
Length of 3' end seq. 305
Connected seq. ID SLE128P
Connected seq.
>SLE128P.Seq
AAAATATAATTGGGATAAATTAATAAATGGTGAGAGTGGAATTAAAAGATTTGAAGGATT
TGAAGATAGTAGAATTGATTGCCCATCAAAAGTTGTAGCAAGAGTACCAAAAGGTGAAGG
TATAGGTGAGTTTAATTCAAATACTATGATACCATCACAAGTGAAATTGGCAAGCTCTGA
TTTCATAAAATATGCAATCGTTGCAACTGATGAAGCTATTAAAGATTCAAAACTAGATAA
ATTCATTGAATCAAATGAAAAACTTCAAGAAAGAATTGGAGTATGTATTGGTTCTGGTAC
AGGTTCAATGGAAGAAATTATCTCAGCAAATGAAAAGATTTCAAATAAATTAAATAACAA
TAACAATAACAGTGATAGTGGTAGTGGTAGTGGTAGTGGTGGTGGTGGTGGTAAAGTTTC
AGCATATTTTATACCAAAAATTTTAATTAATGAAGCATCTGGTATAATTAGTATTTTACA
TAAAGCGAAAGGACCTAATATGTCAATTGTTAGTGCATGTGCAACTGGGTCTCATTGTAT
TGGCGAATCATTTAGAAAGATAAAATATGGTGAAGTGGACGCAATGATATGTGGTGGTAC
TGAAGCGAGTATAAATTCAGTTTCAATGATTGGTTTCTCACGTATGA----------TTA
TAATAATAAAGAAATTATAATGAGCTCAAATAAAGGTTCAATTGGTCATTTGTTGGGTGC
TGCTGGAAGTGTTGAATCAATATTTTCAATTTTATCATTATATAATAATATTATACCACC
AACTTTAAATTTAGAAAATCCATCAAAAGATTNTCAGGGTATAAATTTAGTACAATTTAA
ATCTCAATCAAAACCAATTAGAAATGTTTTAAAAAATTCATTTGGATTTGGTGGAACAAA
TTGTTCTTTAATTTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
Length of connected seq. 952
Full length Seq ID -
Full length Seq. -
Length of full length seq. -