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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLE110
Library SL
(Link to library)
Clone ID SLE110
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16520-1
Original site URL
Representative seq. ID SLE110E
(Link to Original site)
Representative DNA sequence 
>SLE110 (SLE110Q) /CSM/SL/SLE1-A/SLE110Q.Seq.d/
GCTAAAATGAATCTCTCTGAAGATGTTAACCTTGAAGAGTTTGTTATGTCTAAAGATGAT
TTATCCGGTGCTGATATCAAAGCCATCTGTACTGAATCTGGTCTTTTAGCACTCAGAGAA
CGTAGAATGAGAGTAACTTATANTGATTTTAAAAAAGCAAAAGAAAAAGTTTTATACAGA
AAAACAGCTGGTGCTCCAGAAGGTTTATATATGTAAAAAAAAAAAAATCAAAATCAA
sequence update 1998. 5.17
Translated Amino Acid sequence 
AKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTYXDFKKAKEKVLYR
KTAGAPEGLYM*kkknqnq
Translated Amino Acid sequence (All Frames) 
Frame A:
AKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTYXDFKKAKEKVLYR
KTAGAPEGLYM*kkknqnq


Frame B:
lk*islkmltlksllclkmiypvliskpsvlnlvf*hsenve*e*lixilkkqkkkfyte
kqlvlqkvyickkkkiki


Frame C:
*nesl*rc*p*rvcyv*r*firc*yqshly*iwsfstqrt*nesnlx*f*kskrksfiqk
nswcsrrfiyvkkkksks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLE110 (SLE110Q) /CSM/SL/SLE1-A/SLE110Q.Seq.d/                        291   2e-78
SLB640 (SLB640Q) /CSM/SL/SLB6-B/SLB640Q.Seq.d/                        283   6e-76
FC-AJ15 (FC-AJ15Q) /CSM/FC/FC-AJ/FC-AJ15Q.Seq.d/                      283   6e-76
AFN319 (AFN319Q) /CSM/AF/AFN3-A/AFN319Q.Seq.d/                        283   6e-76
SFH857 (SFH857Q) /CSM/SF/SFH8-C/SFH857Q.Seq.d/                        274   5e-73
AFE732 (AFE732Q) /CSM/AF/AFE7-B/AFE732Q.Seq.d/                        204   4e-52
AFA160 (AFA160Q) /CSM/AF/AFA1-C/AFA160Q.Seq.d/                        151   5e-36
SFE651 (SFE651Q) /CSM/SF/SFE6-C/SFE651Q.Seq.d/                        127   8e-29
AFC208 (AFC208Q) /CSM/AF/AFC2-A/AFC208Q.Seq.d/                        113   1e-24
VFB722 (VFB722Q) /CSM/VF/VFB7-A/VFB722Q.Seq.d/                        111   5e-24
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU034642) Dictyostelium discoideum slug cDNA, clone SLE110.      291   3e-96  2
(AU033943) Dictyostelium discoideum slug cDNA, clone SLB640.      283   8e-94  2
(C23790) Dictyostelium discoideum gamete cDNA, clone FC-AJ15.     283   8e-94  2
(BJ402359) Dictyostelium discoideum cDNA clone:dds16b16, 3' ...   274   6e-82  2
(BJ347424) Dictyostelium discoideum cDNA clone:dda27f05, 3' ...   283   2e-80  3
(BJ339806) Dictyostelium discoideum cDNA clone:dda10p07, 3' ...   141   7e-47  3
(BJ342785) Dictyostelium discoideum cDNA clone:dda1g15, 3' e...   149   5e-32  1
(BJ397991) Dictyostelium discoideum cDNA clone:dds10e14, 3' ...   127   3e-29  2
(BJ341097) Dictyostelium discoideum cDNA clone:dda5o02, 3' e...   113   3e-21  1
(BJ429602) Dictyostelium discoideum cDNA clone:ddv4l05, 3' e...   111   1e-20  1
dna update 2009. 3.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF123391_1(AF123391|pid:none) Arabidopsis thaliana 26S proteasom...   117   1e-25
AB161192_1(AB161192|pid:none) Arabidopsis thaliana HLR mRNA for ...   117   1e-25
AY087584_1(AY087584|pid:none) Arabidopsis thaliana clone 36815 m...   116   2e-25
AC006081_7(AC006081|pid:none) Arabidopsis thaliana chromosome 2 ...   116   2e-25
CP001325_99(CP001325|pid:none) Micromonas sp. RCC299 chromosome ...   116   2e-25
EU959285_1(EU959285|pid:none) Zea mays clone 214269 26S protease...   116   3e-25
BT054998_1(BT054998|pid:none) Zea mays full-length cDNA clone ZM...   116   3e-25
FB781850_1(FB781850|pid:none) Sequence 1123 from Patent WO200803...   115   4e-25
BT062241_1(BT062241|pid:none) Zea mays full-length cDNA clone ZM...   115   4e-25
AB037154_1(AB037154|pid:none) Oryza sativa Japonica Group OsRPT2...   115   5e-25
protein update 2009. 7. 5
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SLE110 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLE110E
Full length Seq. 
>SLE110E.Seq
GCTAAAATGAATCTCTCTGAAGATGTTAACCTTGAAGAGTTTGTTATGTCTAAAGATGAT
TTATCCGGTGCTGATATCAAAGCCATCTGTACTGAATCTGGTCTTTTAGCACTCAGAGAA
CGTAGAATGAGAGTAACTTATANTGATTTTAAAAAAGCAAAAGAAAAAGTTTTATACAGA
AAAACAGCTGGTGCTCCAGAAGGTTTATATATGTAAAAAAAAAAAAATCAAAATCAA
Length of full length seq. 237