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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD883
Library SL
(Link to library)
Clone ID SLD883
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14931-1
Original site URL
Representative seq. ID SLD883Z
(Link to Original site)
Representative DNA sequence 
>SLD883 (SLD883Q) /CSM/SL/SLD8-D/SLD883Q.Seq.d/
XXXXXXXXXXGAGCAATTTCGAAGCCGGTACAAAAGCTGCCATGGATGATGTTGTCAATG
CCACAACCAATGGTGCTATCACTATCATTGGTGGTGGTGATACCGCCACTTGTGCTGCCA
AATACAACACTGAAGATAAAGTTAGTCATGTCTCAACTGGTGGTGGTGCTTCATTAGAAT
TATTAGAAGGTAAAGAATTACCAGGTGTTACTGCTTTATCTGATTTATGAATTTTAAAAA
ATAAATTATAAAAAAATAATAATAATAATAATAATAAAAAAA
sequence update 1998. 6.17
Translated Amino Acid sequence 
---SNFEAGTKAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHVSTGGGASLEL
LEGKELPGVTALSDL*ilknkl*knnnnnnnkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---SNFEAGTKAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHVSTGGGASLEL
LEGKELPGVTALSDL*ilknkl*knnnnnnnkk


Frame B:
---aiskpvqklpwmmlsmpqpmvlslslvvvipplvlpnttlkiklvmsqlvvvlh*ny
*kvknyqvlllyliyef*kinykkiiiiiiikk


Frame C:
---qfrsrykschg*ccqchnqwcyhyhwww*yrhlccqiqh*r*s*sclnwwwcfirii
rr*ritrcycfi*fmnfkk*iikk*******k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI369 (VFI369Q) /CSM/VF/VFI3-C/VFI369Q.Seq.d/                        444   e-124
SSG527 (SSG527Q) /CSM/SS/SSG5-B/SSG527Q.Seq.d/                        444   e-124
SSF740 (SSF740Q) /CSM/SS/SSF7-B/SSF740Q.Seq.d/                        444   e-124
SLI789 (SLI789Q) /CSM/SL/SLI7-D/SLI789Q.Seq.d/                        444   e-124
SLH501 (SLH501Q) /CSM/SL/SLH5-A/SLH501Q.Seq.d/                        444   e-124
SLF191 (SLF191Q) /CSM/SL/SLF1-D/SLF191Q.Seq.d/                        444   e-124
SLD883 (SLD883Q) /CSM/SL/SLD8-D/SLD883Q.Seq.d/                        444   e-124
SLC409 (SLC409Q) /CSM/SL/SLC4-A/SLC409Q.Seq.d/                        444   e-124
SLB639 (SLB639Q) /CSM/SL/SLB6-B/SLB639Q.Seq.d/                        444   e-124
AFE535 (AFE535Q) /CSM/AF/AFE5-B/AFE535Q.Seq.d/                        438   e-122
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF316577) Dictyostelium discoideum phosphoglycerate kinase ...   442   e-120  1
(AF018637) Dictyostelium discoideum phosphoglycerate kinase ...   442   e-120  1
(AU053505) Dictyostelium discoideum slug cDNA, clone SLI789.      442   e-120  1
(AU052839) Dictyostelium discoideum slug cDNA, clone SLF191.      442   e-120  1
(AU052752) Dictyostelium discoideum slug cDNA, clone SLD883.      442   e-120  1
(AU039299) Dictyostelium discoideum slug cDNA, clone SLH501.      442   e-120  1
(AU034537) Dictyostelium discoideum slug cDNA, clone SLC409.      442   e-120  1
(AU033942) Dictyostelium discoideum slug cDNA, clone SLB639.      442   e-120  1
(C93071) Dictyostelium discoideum slug cDNA, clone SSF740.        442   e-120  1
(C90092) Dictyostelium discoideum slug cDNA, clone SSG527.        442   e-120  1
dna update 2009. 3.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GPM4) RecName: Full=Phosphoglycerate kinase;          EC=2.7....    97   2e-19
AF018637_1(AF018637|pid:none) Dictyostelium discoideum phosphogl...    97   2e-19
(P25614) RecName: Full=Putative uncharacterized protein YCR013C;...    85   9e-16
AY309061_1(AY309061|pid:none) Schistosoma japonicum phosphoglyce...    78   1e-13
FN315990_1(FN315990|pid:none) Schistosoma japonicum isolate Anhu...    78   1e-13
EZ000104_1(EZ000104|pid:none) TSA: Schistosoma japonicum SJCHGC0...    78   1e-13
AY223444_1(AY223444|pid:none) Schistosoma japonicum clone ZZZ452...    78   1e-13
FN322120_1(FN322120|pid:none) Schistosoma japonicum isolate Anhu...    78   1e-13
FN315993_1(FN315993|pid:none) Schistosoma japonicum isolate Anhu...    76   4e-13
(P41759) RecName: Full=Phosphoglycerate kinase;          EC=2.7....    76   4e-13
protein update 2009. 6. 2
PSORT 

 psg: 0.64  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLD883 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD883Z
3' end seq. 
>SLD883Z.Seq
----------GAGCAATTTCGAAGCCGGTACAAAAGCTGCCATGGATGATGTTGTCAATG
CCACAACCAATGGTGCTATCACTATCATTGGTGGTGGTGATACCGCCACTTGTGCTGCCA
AATACAACACTGAAGATAAAGTTAGTCATGTCTCAACTGGTGGTGGTGCTTCATTAGAAT
TATTAGAAGGTAAAGAATTACCAGGTGTTACTGCTTTATCTGATTTATGAATTTTAAAAA
ATAAATTATAAAAAAATAATAATAATAATAATAATAAAAAAA
Length of 3' end seq. 272
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -