>SLD872 (SLD872Q) /CSM/SL/SLD8-C/SLD872Q.Seq.d/
CCCACGCGTCCGCAAATTAAGGATTTATTTGCATTCAAACCATATGAACTACAAAAATAT
TTTAAAGTTGGTGATCATGTTAAAGCAATTGGAGGTAGATATGAAGGTGAAACAGGTATG
GTGTTAAGAGTAGATGATTTACAGGTCGTTTTATTATCAGATTTGACAATGTCAGAGATT
AAAGTTAAACCTCAAGATTTACAAGAGTGTACAGAAGTAGCAACTGGTCGTTTAGAGTTG
GGTAATTATGXXXXXXXXXXCAACAGCAACAACAACAACAACAACAACAACAACAACAAC
AATCAGCAAATACAACAACCACAACAACCACAACAAATACTGTTTCTCCAACTTCATCAA
CTACAACATCTCCAATCAGACCATCACAAACAAGTCCTTTTACATCATTTGATGGTTTTA
TGAGATCAAATAACAGTAATAATAATAATAATAACAACTTACAATAAAAATTAAAAATTA
AAAATGTGTATAGTTTATTATAA

PTRPQIKDLFAFKPYELQKYFKVGDHVKAIGGRYEGETGMVLRVDDLQVVLLSDLTMSEI
KVKPQDLQECTEVATGRLELGNY---

---QQQQQQQQQQQQQQSANTTTTTTTTNTVSPTSSTTTSPIRPSQTSPFTSFDGFMRSN
NSNNNNNNNLQ*klkiknvysll*

Frame A:
PTRPQIKDLFAFKPYELQKYFKVGDHVKAIGGRYEGETGMVLRVDDLQVVLLSDLTMSEI
KVKPQDLQECTEVATGRLELGNY---

---QQQQQQQQQQQQQQSANTTTTTTTTNTVSPTSSTTTSPIRPSQTSPFTSFDGFMRSN
NSNNNNNNNLQ*klkiknvysll*

Frame B:
prvrklriylhsnhmnyknilklvimlkqlevdmkvkqvwc*e*miyrsfyyqi*qcqrl
klnlkiyksvqk*qlvv*swvim---

---nsnnnnnnnnnnnnqqiqqpqqpqqilflqlhqlqhlqsdhhkqvllhhlmvl*dqi
tviiiiittynkn*klkmcivyy

Frame C:
hasan*gficiqti*ttkif*sw*sc*snwr*i*r*nrygvksr*ftgrfiirfdnvrd*
s*tsrftrvyrssnwsfrvg*l---

---tatttttttttttiskynnhnnhnkycfsnfinynisnqtitnksfyii*wfyeik*
q******qltikikn*kcv*fii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD872 (SLD872Q) /CSM/SL/SLD8-C/SLD872Q.Seq.d/                        496   e-139
SLE210 (SLE210Q) /CSM/SL/SLE2-A/SLE210Q.Seq.d/                        472   e-132
AFC757 (AFC757Q) /CSM/AF/AFC7-C/AFC757Q.Seq.d/                        472   e-132
VFJ619 (VFJ619Q) /CSM/VF/VFJ6-A/VFJ619Q.Seq.d/                        218   6e-56
SFE853 (SFE853Q) /CSM/SF/SFE8-C/SFE853Q.Seq.d/                        178   5e-44
SSE710 (SSE710Q) /CSM/SS/SSE7-A/SSE710Q.Seq.d/                        176   2e-43
CHB876 (CHB876Q) /CSM/CH/CHB8-D/CHB876Q.Seq.d/                        174   8e-43
AFJ755 (AFJ755Q) /CSM/AF/AFJ7-C/AFJ755Q.Seq.d/                        137   2e-31
VSD848 (VSD848Q) /CSM/VS/VSD8-B/VSD848Q.Seq.d/                         38   0.12
VFO263 (VFO263Q) /CSM/VF/VFO2-C/VFO263Q.Seq.d/                         38   0.12

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061383) Dictyostelium discoideum slug cDNA, clone SLD872.      494   e-135  1
(BJ324476) Dictyostelium discoideum cDNA clone:dda6b15, 5' e...   470   e-128  1
(BJ414669) Dictyostelium discoideum cDNA clone:ddv20e06, 5' ...   216   6e-52  1
(AU052743) Dictyostelium discoideum slug cDNA, clone SLD872.      180   6e-45  2
(C84711) Dictyostelium discoideum slug cDNA, clone SSE710.        178   3e-44  2
(BJ398013) Dictyostelium discoideum cDNA clone:dds10j14, 3' ...   180   3e-41  1
(BJ363265) Dictyostelium discoideum cDNA clone:ddc25h20, 5' ...   174   2e-39  1
(BJ327501) Dictyostelium discoideum cDNA clone:dda20n13, 5' ...   105   4e-24  2
(FD457511) EGGBE45TR Haematobia irritans eggs Haematobia irr...    30   0.016  3
(CP000849) Rickettsia bellii OSU 85-389, complete genome.          50   0.079  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC129066_1(BC129066|pid:none) Xenopus laevis hypothetical protei...    76   4e-13
(O55201) RecName: Full=Transcription elongation factor SPT5; Alt...    75   9e-13
BC134446_1(BC134446|pid:none) Bos taurus suppressor of Ty 5 homo...    75   9e-13
AK145117_1(AK145117|pid:none) Mus musculus mammary gland RCB-052...    75   9e-13
BC057449_1(BC057449|pid:none) Mus musculus suppressor of Ty 5 ho...    75   9e-13
AB463294_1(AB463294|pid:none) Synthetic construct DNA, clone: pF...    75   9e-13
AK302954_1(AK302954|pid:none) Homo sapiens cDNA FLJ55629 complet...    75   9e-13
AK146453_1(AK146453|pid:none) Mus musculus 16 days embryo heart ...    75   9e-13
AK146055_1(AK146055|pid:none) Mus musculus 13 days pregnant adul...    75   9e-13
AK146583_1(AK146583|pid:none) Mus musculus 17 days embryo heart ...    75   9e-13

 psg: 0.69  gvh: 0.52  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SLD872 is cyt

>SLD872F.Seq
CCCACGCGTCCGCAAATTAAGGATTTATTTGCATTCAAACCATATGAACTACAAAAATAT
TTTAAAGTTGGTGATCATGTTAAAGCAATTGGAGGTAGATATGAAGGTGAAACAGGTATG
GTGTTAAGAGTAGATGATTTACAGGTCGTTTTATTATCAGATTTGACAATGTCAGAGATT
AAAGTTAAACCTCAAGATTTACAAGAGTGTACAGAAGTAGCAACTGGTCGTTTAGAGTTG
GGTAATTATG----------

>SLD872Z.Seq
----------CAACAGCAACAACAACAACAACAACAACAACAACAACAACAATCAGCAAA
TACAACAACCACAACAACCACAACAAATACTGTTTCTCCAACTTCATCAACTACAACATC
TCCAATCAGACCATCACAAACAAGTCCTTTTACATCATTTGATGGTTTTATGAGATCAAA
TAACAGTAATAATAATAATAATAACAACTTACAATAAAAATTAAAAATTAAAAATGTGTA
TAGTTTATTATAA

>SLD872P.Seq
CCCACGCGTCCGCAAATTAAGGATTTATTTGCATTCAAACCATATGAACTACAAAAATAT
TTTAAAGTTGGTGATCATGTTAAAGCAATTGGAGGTAGATATGAAGGTGAAACAGGTATG
GTGTTAAGAGTAGATGATTTACAGGTCGTTTTATTATCAGATTTGACAATGTCAGAGATT
AAAGTTAAACCTCAAGATTTACAAGAGTGTACAGAAGTAGCAACTGGTCGTTTAGAGTTG
GGTAATTATG----------CAACAGCAACAACAACAACAACAACAACAACAACAACAAC
AATCAGCAAATACAACAACCACAACAACCACAACAAATACTGTTTCTCCAACTTCATCAA
CTACAACATCTCCAATCAGACCATCACAAACAAGTCCTTTTACATCATTTGATGGTTTTA
TGAGATCAAATAACAGTAATAATAATAATAATAACAACTTACAATAAAAATTAAAAATTA
AAAATGTGTATAGTTTATTATAA