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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD857
Library SL
(Link to library)
Clone ID SLD857
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12148-1
Original site URL
Representative seq. ID SLD857F
(Link to Original site)
Representative DNA sequence 
>SLD857 (SLD857Q) /CSM/SL/SLD8-C/SLD857Q.Seq.d/
GAAATTAATTCCATTGTAATTTCTCATGCAAATAATACATTTGAATCATCTTCTATTGAA
GAGCCAACAGAGTTATCAAAGAAATTGGAAGAAAGTTTCAAACAATTGGACACAATTTTA
ACAGATGAATTATCNAATATTGAAAAACAACAACAACAACAACAACAGCAAACAAATGAT
GGTGGTGGTAGTGGTATAAGTAGTAATACAAATACAAGTATCAGTGGTGATAATAGTGAA
AATGGTGATAGTTTAAATAGTAGTACTAGTAATCAAAGTCCTTTAXXXXXXXXXX
sequence update 1999. 2.23
Translated Amino Acid sequence 
EINSIVISHANNTFESSSIEEPTELSKKLEESFKQLDTILTDELSNIEKQQQQQQQQTND
GGGSGISSNTNTSISGDNSENGDSLNSSTSNQSP---
Translated Amino Acid sequence (All Frames) 
Frame A:
EINSIVISHANNTFESSSIEEPTELSKKLEESFKQLDTILTDELSNIEKQQQQQQQQTND
GGGSGISSNTNTSISGDNSENGDSLNSSTSNQSP---


Frame B:
klipl*flmqiihlnhlllksqqsyqrnwkkvsnnwtqf*qmnyxilknnnnnnnskqmm
vvvvv*vviqiqvsvviivkmviv*ivvlvikvl---


Frame C:
n*fhcnfsck*yi*iify*ranrvikeigrkfqtighnfnr*iixy*ktttttttank*w
ww*wyk**ykykyqw****kw**fk**y**sksf---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD857 (SLD857Q) /CSM/SL/SLD8-C/SLD857Q.Seq.d/                        281   3e-75
SLC290 (SLC290Q) /CSM/SL/SLC2-D/SLC290Q.Seq.d/                        250   1e-65
CHN833 (CHN833Q) /CSM/CH/CHN8-B/CHN833Q.Seq.d/                        244   6e-64
SLF745 (SLF745Q) /CSM/SL/SLF7-B/SLF745Q.Seq.d/                        218   4e-56
SLF592 (SLF592Q) /CSM/SL/SLF5-D/SLF592Q.Seq.d/                        218   4e-56
SLE791 (SLE791Q) /CSM/SL/SLE7-D/SLE791Q.Seq.d/                        218   4e-56
SLD503 (SLD503Q) /CSM/SL/SLD5-A/SLD503Q.Seq.d/                        218   4e-56
SLC682 (SLC682Q) /CSM/SL/SLC6-D/SLC682Q.Seq.d/                        218   4e-56
AHB494 (AHB494Q) /CSM/AH/AHB4-D/AHB494Q.Seq.d/                        218   4e-56
SLF606 (SLF606Q) /CSM/SL/SLF6-A/SLF606Q.Seq.d/                        210   9e-54
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061373) Dictyostelium discoideum slug cDNA, clone SLD857.      281   e-131  2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   250   e-121  2
(AU034227) Dictyostelium discoideum slug cDNA, clone SLC290.      250   e-121  2
(BJ384381) Dictyostelium discoideum cDNA clone:ddc49b10, 3' ...   244   2e-91  2
(AU061759) Dictyostelium discoideum slug cDNA, clone SLF745.      218   6e-86  2
(AU034322) Dictyostelium discoideum slug cDNA, clone SLC682.      218   9e-66  2
(AU053119) Dictyostelium discoideum slug cDNA, clone SLF745.      218   9e-53  1
(AU053055) Dictyostelium discoideum slug cDNA, clone SLF592.      218   9e-53  1
(AU052545) Dictyostelium discoideum slug cDNA, clone SLD503.      218   9e-53  1
(AU039585) Dictyostelium discoideum slug cDNA, clone SLE791.      218   9e-53  1
dna update 2009. 3.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_32(AC116305|pid:none) Dictyostelium discoideum chromoso...   109   3e-23
protein update 2009. 1.22
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.60  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SLD857 is nuc
5' end seq. ID SLD857F
5' end seq. 
>SLD857F.Seq
GAAATTAATTCCATTGTAATTTCTCATGCAAATAATACATTTGAATCATCTTCTATTGAA
GAGCCAACAGAGTTATCAAAGAAATTGGAAGAAAGTTTCAAACAATTGGACACAATTTTA
ACAGATGAATTATCNAATATTGAAAAACAACAACAACAACAACAACAGCAAACAAATGAT
GGTGGTGGTAGTGGTATAAGTAGTAATACAAATACAAGTATCAGTGGTGATAATAGTGAA
AATGGTGATAGTTTAAATAGTAGTACTAGTAATCAAAGTCCTTTA----------
Length of 5' end seq. 285
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -