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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD833
Library SL
(Link to library)
Clone ID SLD833
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10974-1|Contig-U15420-1
Original site URL
Representative seq. ID SLD833P
(Link to Original site)
Representative DNA sequence 
>SLD833 (SLD833Q) /CSM/SL/SLD8-B/SLD833Q.Seq.d/
CCTGACTCAATCAAAGGTCCCGTTATTAATGCTAAAGAACAAAGAANTGGTATTGTTTCA
ATCTTAGAATTAACATCGTTAGATGATACTAACTCTCAAGTGTGCCCTGTTCGCCACCTT
GCAACATACCTTAXXXXXXXXXXGTNGGCAAATCAAATCATTCTATGGTAAAGGCATCNG
TTAAAGAATTTCGTAAAATCTTTCCCAAAATTAAAACAAATATTTAAAGAATGTATTGGT
AACAATTAGTTTAGATTTAAATGTAAATTGNTCTTTACTTAAAAGATAGATTCGAATGGG
ATATCATTGGTCCAAATTTACCTGAATCATTTGCAAAATCAATTTCAATGGATTTAGGTT
TATCAAGAGAATTTGAAAATATTATTGTTTATTCAATTAGAGAACAAATTCAAACTCATT
ATAGTCAAATTACACAACAATATAATTTAAATCCAAATGGATTTAGATATTATTCATCAA
TGAGAAATCAACCAATTCATCATGATCAAATNTTAAGAAATGACTATCAATTAACTTATT
TCACACCAACCATTAGTTATAGACAACCTCCAAAGGTGGGGGGATATGATCCACCAACAG
CTTATTTCATTCAACAAAATCATCTTAGACAACAAACTNTTCAACAACAACAACAATTAA
AATATCAATTAAGAACTTCAACTATACAACAACAACAACATCAACAACATCCACAACAAT
TTGTTCGTTAAAAAACTAAAAAAAAAAAGACAGCTA
sequence update 1999. 2.23
Translated Amino Acid sequence 
PDSIKGPVINAKEQRXGIVSILELTSLDDTNSQVCPVRHLATYL---

---VGKSNHSMVKASVKEFRKIFPKIKTNI*rmyw*qlv*i*m*ixlylkdrfewdiigp
nlpesfaksismdlglsrefeniivysireqiqthysqitqqynlnpngfryyssmrnqp
ihhdqxlrndyqltyftptisyrqppkvggydpptayfiqqnhlrqqtxqqqqqlkyqlr
tstiqqqqhqqhpqqfvr*ktkkkkta
Translated Amino Acid sequence (All Frames) 
Frame A:
PDSIKGPVINAKEQRXGIVSILELTSLDDTNSQVCPVRHLATYL---

---VGKSNHSMVKASVKEFRKIFPKIKTNI*rmyw*qlv*i*m*ixlylkdrfewdiigp
nlpesfaksismdlglsrefeniivysireqiqthysqitqqynlnpngfryyssmrnqp
ihhdqxlrndyqltyftptisyrqppkvggydpptayfiqqnhlrqqtxqqqqqlkyqlr
tstiqqqqhqqhpqqfvr*ktkkkkta

Frame B:
ltqskvpllmlknkexvlfqs*n*hr*miltlkcalfatlqhtl---

---xanqiilw*rhxlknfvksfpklkqifkecignn*frfkcklxft*kidsngislvq
iylnhlqnqfqwi*vyqenlkillfiqlenkfkliivklhnnii*iqmdldiihq*einq
fimikx*emtin*lishqplvidnlqrwgdmihqqlisfnkiildnklfnnnnn*nin*e
lqlynnnninnihnnlfvkklkkkrql

Frame C:
*lnqrsry*c*rtkxwycfnlrinivr*y*lssvpcsppcnip---

---xqiksfygkgix*ris*nlsqn*nkylknvlvtisldlnvnxsllkr*irmgyhwsk
ft*iickinfngfrfikri*kyyclfn*rtnsnsl*snytti*fkskwi*ilfinekstn
ss*snxkk*lsinlfhtnh*l*ttskgggi*stnslfhstkss*ttnxsttttikisikn
fnytttttsttstticslkn*kkkds
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD833 (SLD833Q) /CSM/SL/SLD8-B/SLD833Q.Seq.d/                       1176   0.0
CHD323 (CHD323Q) /CSM/CH/CHD3-A/CHD323Q.Seq.d/                        852   0.0
AFK112 (AFK112Q) /CSM/AF/AFK1-A/AFK112Q.Seq.d/                        852   0.0
AFM252 (AFM252Q) /CSM/AF/AFM2-C/AFM252Q.Seq.d/                        817   0.0
AFJ392 (AFJ392Q) /CSM/AF/AFJ3-D/AFJ392Q.Seq.d/                        805   0.0
VFF134 (VFF134Q) /CSM/VF/VFF1-B/VFF134Q.Seq.d/                        737   0.0
SFE356 (SFE356Q) /CSM/SF/SFE3-C/SFE356Q.Seq.d/                        668   0.0
SLD835 (SLD835Q) /CSM/SL/SLD8-B/SLD835Q.Seq.d/                        276   5e-73
AHO217 (AHO217Q) /CSM/AH/AHO2-A/AHO217Q.Seq.d/                        224   2e-57
FC-AE03 (FC-AE03Q) /CSM/FC/FC-AE/FC-AE03Q.Seq.d/                      208   9e-53
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052719) Dictyostelium discoideum slug cDNA, clone SLD833.      938   0.0    1
(BJ344945) Dictyostelium discoideum cDNA clone:dda21g03, 3' ...   702   0.0    5
(BJ376356) Dictyostelium discoideum cDNA clone:ddc28n05, 3' ...   702   0.0    5
(BJ346928) Dictyostelium discoideum cDNA clone:dda25g14, 3' ...   678   0.0    5
(BJ344591) Dictyostelium discoideum cDNA clone:dda19h23, 3' ...   666   0.0    5
(BJ428249) Dictyostelium discoideum cDNA clone:ddv11c09, 3' ...   620   0.0    5
(BJ400312) Dictyostelium discoideum cDNA clone:dds9p13, 3' e...   537   0.0    5
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...   258   3e-64  1
(AU061357) Dictyostelium discoideum slug cDNA, clone SLD833.      258   3e-64  1
(AU052720) Dictyostelium discoideum slug cDNA, clone SLD835.      256   1e-63  1
dna update 2009. 3.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B24785(B24785)hypothetical protein 1028 - slime mold (Dictyostel...    88   3e-16
S43599(S43599)Snf5 homolog R07E5.3 - Caenorhabditis elegans            49   1e-04
E88427(E88427) protein R07E5.3 [imported] - Caenorhabditis elega...    49   1e-04
AM920436_1924(AM920436|pid:none) Penicillium chrysogenum Wiscons...    47   6e-04
FN317552_1(FN317552|pid:none) Schistosoma japonicum isolate Anhu...    47   8e-04
AY811750_1(AY811750|pid:none) Schistosoma japonicum SJCHGC08101 ...    47   8e-04
U04847_1(U04847|pid:none) Human Ini1 mRNA, complete cds.               46   0.001
(Q5ZK40) RecName: Full=SWI/SNF-related matrix-associated actin-d...    46   0.001
(Q6GQ82) RecName: Full=SWI/SNF-related matrix-associated actin-d...    46   0.001
(Q5U379) RecName: Full=SWI/SNF-related matrix-associated actin-d...    46   0.001
protein update 2009. 6. 2
PSORT 

 psg: 0.61  gvh: 0.63  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for SLD833 is cyt
5' end seq. ID SLD833F
5' end seq. 
>SLD833F.Seq
CCTGACTCAATCAAAGGTCCCGTTATTAATGCTAAAGAACAAAGAANTGGTATTGTTTCA
ATCTTAGAATTAACATCGTTAGATGATACTAACTCTCAAGTGTGCCCTGTTCGCCACCTT
GCAACATACCTTA----------
Length of 5' end seq. 133
3' end seq. ID SLD833Z
3' end seq. 
>SLD833Z.Seq
----------GTNGGCAAATCAAATCATTCTATGGTAAAGGCATCNGTTAAAGAATTTCG
TAAAATCTTTCCCAAAATTAAAACAAATATTTAAAGAATGTATTGGTAACAATTAGTTTA
GATTTAAATGTAAATTGNTCTTTACTTAAAAGATAGATTCGAATGGGATATCATTGGTCC
AAATTTACCTGAATCATTTGCAAAATCAATTTCAATGGATTTAGGTTTATCAAGAGAATT
TGAAAATATTATTGTTTATTCAATTAGAGAACAAATTCAAACTCATTATAGTCAAATTAC
ACAACAATATAATTTAAATCCAAATGGATTTAGATATTATTCATCAATGAGAAATCAACC
AATTCATCATGATCAAATNTTAAGAAATGACTATCAATTAACTTATTTCACACCAACCAT
TAGTTATAGACAACCTCCAAAGGTGGGGGGATATGATCCACCAACAGCTTATTTCATTCA
ACAAAATCATCTTAGACAACAAACTNTTCAACAACAACAACAATTAAAATATCAATTAAG
AACTTCAACTATACAACAACAACAACATCAACAACATCCACAACAATTTGTTCGTTAAAA
AACTAAAAAAAAAAAGACAGCTA
Length of 3' end seq. 613
Connected seq. ID SLD833P
Connected seq. 
>SLD833P.Seq
CCTGACTCAATCAAAGGTCCCGTTATTAATGCTAAAGAACAAAGAANTGGTATTGTTTCA
ATCTTAGAATTAACATCGTTAGATGATACTAACTCTCAAGTGTGCCCTGTTCGCCACCTT
GCAACATACCTTA----------GTNGGCAAATCAAATCATTCTATGGTAAAGGCATCNG
TTAAAGAATTTCGTAAAATCTTTCCCAAAATTAAAACAAATATTTAAAGAATGTATTGGT
AACAATTAGTTTAGATTTAAATGTAAATTGNTCTTTACTTAAAAGATAGATTCGAATGGG
ATATCATTGGTCCAAATTTACCTGAATCATTTGCAAAATCAATTTCAATGGATTTAGGTT
TATCAAGAGAATTTGAAAATATTATTGTTTATTCAATTAGAGAACAAATTCAAACTCATT
ATAGTCAAATTACACAACAATATAATTTAAATCCAAATGGATTTAGATATTATTCATCAA
TGAGAAATCAACCAATTCATCATGATCAAATNTTAAGAAATGACTATCAATTAACTTATT
TCACACCAACCATTAGTTATAGACAACCTCCAAAGGTGGGGGGATATGATCCACCAACAG
CTTATTTCATTCAACAAAATCATCTTAGACAACAAACTNTTCAACAACAACAACAATTAA
AATATCAATTAAGAACTTCAACTATACAACAACAACAACATCAACAACATCCACAACAAT
TTGTTCGTTAAAAAACTAAAAAAAAAAAGACAGCTA
Length of connected seq. 746
Full length Seq ID -
Full length Seq. -
Length of full length seq. -