SLD814
Library SL
(Link to library)
Clone ID SLD814
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10985-1
Original site URL
Representative seq. ID SLD814Z
(Link to Original site)
Representative DNA sequence
>SLD814 (SLD814Q) /CSM/SL/SLD8-A/SLD814Q.Seq.d/
XXXXXXXXXXGAGAGAGGGATGAAATTGAACGTGAGCAACGTCGTCTTGAAAAAATTCAA
CACGAAAAGGAGGAAAAGGAAAGATTAGAAAGAGAATTAAAAGAAAAAGAAGAACGTGAA
CTC
sequence update 1998. 6.17
Translated Amino Acid sequence
---ERDEIEREQRRLEKIQHEKEEKERLERELKEKEEREL


Translated Amino Acid sequence (All Frames)
Frame A:
---reg*n*t*atss*knstrkggkgkirkrikrkrrt*t


Frame B:
---ERDEIEREQRRLEKIQHEKEEKERLERELKEKEEREL


Frame C:
---rgmklnvsnvvlkkfntkrrkrkd*ken*kkkknvn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLJ113 (SLJ113Q) /CSM/SL/SLJ1-A/SLJ113Q.Seq.d/ 107 4e-23
SLI189 (SLI189Q) /CSM/SL/SLI1-D/SLI189Q.Seq.d/ 107 4e-23
SLE688 (SLE688Q) /CSM/SL/SLE6-D/SLE688Q.Seq.d/ 107 4e-23
SLE655 (SLE655Q) /CSM/SL/SLE6-C/SLE655Q.Seq.d/ 107 4e-23
SLD814 (SLD814Q) /CSM/SL/SLD8-A/SLD814Q.Seq.d/ 107 4e-23
FC-AA18 (FC-AA18Q) /CSM/FC/FC-AA/FC-AA18Q.Seq.d/ 107 4e-23
AFJ534 (AFJ534Q) /CSM/AF/AFJ5-B/AFJ534Q.Seq.d/ 107 4e-23
SLG793 (SLG793Q) /CSM/SL/SLG7-D/SLG793Q.Seq.d/ 94 5e-19
AFB739 (AFB739Q) /CSM/AF/AFB7-B/AFB739Q.Seq.d/ 86 1e-16
SLK853 (SLK853Q) /CSM/SL/SLK8-C/SLK853Q.Seq.d/ 36 0.11

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU053560) Dictyostelium discoideum slug cDNA, clone SLJ113. 74 1e-09 1
(AU053233) Dictyostelium discoideum slug cDNA, clone SLI189. 74 1e-09 1
(AU052710) Dictyostelium discoideum slug cDNA, clone SLD814. 74 1e-09 1
(AU034917) Dictyostelium discoideum slug cDNA, clone SLE688. 74 1e-09 1
(AU034895) Dictyostelium discoideum slug cDNA, clone SLE655. 74 1e-09 1
(C22943) Dictyostelium discoideum gamete cDNA, clone FC-AA18. 74 1e-09 1
(BJ344713) Dictyostelium discoideum cDNA clone:dda20c09, 3' ... 74 1e-09 1
(BJ340927) Dictyostelium discoideum cDNA clone:dda4n09, 3' e... 72 5e-09 1
(AU039941) Dictyostelium discoideum slug cDNA, clone SLG793. 62 4e-06 1
(AU054170) Dictyostelium discoideum slug cDNA, clone SLK853. 32 2.9 2
dna update 2009. 3.22
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 39,669,708
protein update 2009. 6. 2
PSORT

psg: 0.75 gvh: -0.14 alm: 0.97 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.24 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
16.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for SLD814 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD814Z
3' end seq.
>SLD814Z.Seq
----------GAGAGAGGGATGAAATTGAACGTGAGCAACGTCGTCTTGAAAAAATTCAA
CACGAAAAGGAGGAAAAGGAAAGATTAGAAAGAGAATTAAAAGAAAAAGAAGAACGTGAA
CTC
Length of 3' end seq. 113
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -