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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD809
Library SL
(Link to library)
Clone ID SLD809
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SLD809P
(Link to Original site)
Representative DNA sequence 
>SLD809 (SLD809Q) /CSM/SL/SLD8-A/SLD809Q.Seq.d/
CACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACATTTG
TACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTCTTC
ATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTACTAC
TGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATAC
TACTACTGGTGGTTCAACCACTGGCTCACATACTACXXXXXXXXXXTCTGGGGTGATAAT
GATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTC
AATGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAA
GAAGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTT
AATAACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTT
TTTTAATATTCAAAGACTTTACA
sequence update 1999. 2.23
Translated Amino Acid sequence 
TSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHTTT
GGSTTGSHTTTGGSTTGSHTTTGGSTTGSHT---

---SGVIMMNTLVITTVMLMKKILMKISMVMMNLKLMLKVISKKMISKKNMHFIKLNFFS
*knnnnnlitnhyhq**hynitlitilffniqrly
Translated Amino Acid sequence (All Frames) 
Frame A:
hirwytrfl**s*lskwlhlynsksissmcfsiilfvkffinhwltyyhwwfnhwltyyy
wwfnhwltyyywwfnhwltyyywwfnhwltyy---

---SGVIMMNTLVITTVMLMKKILMKISMVMMNLKLMLKVISKKMISKKNMHFIKLNFFS
*knnnnnlitnhyhq**hynitlitilffniqrly

Frame B:
TSGGTPGSCDKVNCPNGYICTIVNQLAVCVSPSSSSSSSSSTTGSHTTTGGSTTGSHTTT
GGSTTGSHTTTGGSTTGSHTTTGGSTTGSHT---

---lg****il***lplc**rry**rfqw***i*n*c*r*fprr*frrricilln*tffh
kkiiiii**liiiinnniiill**qyfflifkdft

Frame C:
hqvvhqvlviklivqmvtfvq**in*qyvflhhplrqvlhqplahilplvvqplahilll
vvqplahilllvvqplahilllvvqplahil---

---wgdndeyfsdnyryvdeedidedfngndefeidvegdfqeddfeeeyafy*iklffi
kk****fnn*slssiitl*yyfnnntff*ysktl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD809 (SLD809Q) /CSM/SL/SLD8-A/SLD809Q.Seq.d/                        829   0.0
SFJ181 (SFJ181Q) /CSM/SF/SFJ1-D/SFJ181Q.Seq.d/                        547   e-155
SFH869 (SFH869Q) /CSM/SF/SFH8-C/SFH869Q.Seq.d/                        547   e-155
SFD793 (SFD793Q) /CSM/SF/SFD7-D/SFD793Q.Seq.d/                        547   e-155
CHD579 (CHD579Q) /CSM/CH/CHD5-D/CHD579Q.Seq.d/                        547   e-155
CHD275 (CHD275Q) /CSM/CH/CHD2-D/CHD275Q.Seq.d/                        547   e-155
CHC435 (CHC435Q) /CSM/CH/CHC4-B/CHC435Q.Seq.d/                        547   e-155
CHB431 (CHB431Q) /CSM/CH/CHB4-B/CHB431Q.Seq.d/                        547   e-155
CHA679 (CHA679Q) /CSM/CH/CHA6-D/CHA679Q.Seq.d/                        547   e-155
CHA516 (CHA516Q) /CSM/CH/CHA5-A/CHA516Q.Seq.d/                        547   e-155
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(M26238) D.discoideum spore coat protein SP70 gene, complete...   547   0.0    2
(AC115584) Dictyostelium discoideum chromosome 2 map complem...   531   0.0    3
(BJ398559) Dictyostelium discoideum cDNA clone:dds12n19, 3' ...   478   0.0    2
(AU061350) Dictyostelium discoideum slug cDNA, clone SLD809.      547   e-151  1
(BJ401890) Dictyostelium discoideum cDNA clone:dds19a21, 3' ...   547   e-151  1
(BJ388878) Dictyostelium discoideum cDNA clone:dds16j18, 5' ...   547   e-151  1
(BJ388298) Dictyostelium discoideum cDNA clone:dds8j23, 5' e...   547   e-151  1
(BJ376500) Dictyostelium discoideum cDNA clone:ddc28e20, 3' ...   547   e-151  1
(BJ364090) Dictyostelium discoideum cDNA clone:ddc29m19, 5' ...   547   e-151  1
(BJ363373) Dictyostelium discoideum cDNA clone:ddc26f10, 5' ...   547   e-151  1
dna update 2009. 3.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    76   7e-13
CP001574_180(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    56   7e-07
DQ059011_2(DQ059011|pid:none) Samia cynthia ricini NADH dehydrog...    42   0.011
CP000478_3884(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    40   0.032
AM494940_72(AM494940|pid:none) Leishmania braziliensis chromosom...    38   0.16
DQ296176_1(DQ296176|pid:none) Brassica rapa clone 34 unknown mRNA.     38   0.21
BA000030_4488(BA000030|pid:none) Streptomyces avermitilis MA-468...    37   0.27
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    37   0.46
FJ549546_1(FJ549546|pid:none) Mytilus galloprovincialis isolate ...    37   0.46
FJ890850_5(FJ890850|pid:none) Mytilus galloprovincialis isolate ...    37   0.46
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.62  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.56  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: mitochondrial
	 16.0 %: nuclear

>> prediction for SLD809 is mit
5' end seq. ID SLD809F
5' end seq. 
>SLD809F.Seq
CACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACATTTG
TACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTCTTC
ATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTACTAC
TGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATAC
TACTACTGGTGGTTCAACCACTGGCTCACATACTAC----------
Length of 5' end seq. 276
3' end seq. ID SLD809Z
3' end seq. 
>SLD809Z.Seq
----------TCTGGGGTGATAATGATGAATACTTTAGTGATAACTACCGTTATGTTGAT
GAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATTTGAAATTGATGTTGAAGGT
GATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTATTAAATTAAACTTTTTTTC
ATAAAAAAATAATAATAATAATTTAATAACTAATCATTATCATCAATAATAACATTATAA
TATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGACTTTACA
Length of 3' end seq. 277
Connected seq. ID SLD809P
Connected seq. 
>SLD809P.Seq
CACATCAGGTGGTACACCAGGTTCTTGTGATAAAGTTAATTGTCCAAATGGTTACATTTG
TACAATAGTAAATCAATTAGCAGTATGTGTTTCTCCATCATCCTCTTCGTCAAGTTCTTC
ATCAACCACTGGCTCACATACTACCACTGGTGGTTCAACCACTGGCTCACATACTACTAC
TGGTGGTTCAACCACTGGCTCACATACTACTACTGGTGGTTCAACCACTGGCTCACATAC
TACTACTGGTGGTTCAACCACTGGCTCACATACTAC----------TCTGGGGTGATAAT
GATGAATACTTTAGTGATAACTACCGTTATGTTGATGAAGAAGATATTGATGAAGATTTC
AATGGTAATGATGAATTTGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAA
GAAGAATATGCATTTTATTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTT
AATAACTAATCATTATCATCAATAATAACATTATAATATTACTTTAATAACAATACTTTT
TTTTAATATTCAAAGACTTTACA
Length of connected seq. 553
Full length Seq ID -
Full length Seq. -
Length of full length seq. -