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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD776
Library SL
(Link to library)
Clone ID SLD776
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09260-1
Original site URL
Representative seq. ID SLD776F
(Link to Original site)
Representative DNA sequence 
>SLD776 (SLD776Q) /CSM/SL/SLD7-D/SLD776Q.Seq.d/
CAATTAACATCGAATGTGTTATTTCATATGACGATATTAATAATTAGAAAAACATANATA
AATAGTATAAATAAGTATATAAATAAATATACAAATATATAAATAACCAAATATATATTA
ATAAACCAACCTTATAAATAAAATTAAAAAATAAGATGGCATCAAATTTACCACAAGAGA
GAAATCATGAAGCATGTCTATTAATTAGAGATTTAGATCCAATGGTTACAGAATCATTAT
TAATGGAATTATTTATTXXXXXXXXXX
sequence update 1999. 2.23
Translated Amino Acid sequence 
iniecvisyddinn*knixk*yk*vyk*iykyinnqiyinkptl*IKLKNKMASNLPQER
NHEACLLIRDLDPMVTESLLMELF---
Translated Amino Acid sequence (All Frames) 
Frame A:
qltsnvlfhmtiliirktxinsinkyinkytni*itkyilinqpyk*n*kirwhqiyhkr
eimkhvy*lei*iqwlqnhy*wnyl---


Frame B:
n*hrmcyfi*ry**lekhx*iv*isi*iniqiyk*pniy**tnlinkikk*dgikfttre
ks*smsin*rfrsngyriiingiiy---


Frame C:
iniecvisyddinn*knixk*yk*vyk*iykyinnqiyinkptl*IKLKNKMASNLPQER
NHEACLLIRDLDPMVTESLLMELF---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ594 (SLJ594Q) /CSM/SL/SLJ5-D/SLJ594Q.Seq.d/                        204   5e-52
SLD776 (SLD776Q) /CSM/SL/SLD7-D/SLD776Q.Seq.d/                        204   5e-52
SFJ766 (SFJ766Q) /CSM/SF/SFJ7-C/SFJ766Q.Seq.d/                         36   0.25
AHL302 (AHL302Q) /CSM/AH/AHL3-A/AHL302Q.Seq.d/                         36   0.25
AHE273 (AHE273Q) /CSM/AH/AHE2-D/AHE273Q.Seq.d/                         36   0.25
VSK481 (VSK481Q) /CSM/VS/VSK4-D/VSK481Q.Seq.d/                         34   1.0
VSJ868 (VSJ868Q) /CSM/VS/VSJ8-C/VSJ868Q.Seq.d/                         34   1.0
VSJ818 (VSJ818Q) /CSM/VS/VSJ8-A/VSJ818Q.Seq.d/                         34   1.0
VSJ624 (VSJ624Q) /CSM/VS/VSJ6-A/VSJ624Q.Seq.d/                         34   1.0
VSJ236 (VSJ236Q) /CSM/VS/VSJ2-B/VSJ236Q.Seq.d/                         34   1.0
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061332) Dictyostelium discoideum slug cDNA, clone SLD776.      204   2e-61  2
(AU060395) Dictyostelium discoideum slug cDNA, clone SLJ594.      204   3e-60  2
(AC149971) Strongylocentrotus purpuratus clone R3-32A20, WOR...    46   0.63   1
(AC181557) Strongylocentrotus purpuratus clone R3-1109L17, W...    46   0.63   1
(AC177074) Strongylocentrotus purpuratus clone R3-4004K19, W...    46   0.63   1
(AC005699) Homo sapiens chromosome 4 clone C0473M13 map 4p16...    44   2.5    1
(AC181547) Strongylocentrotus purpuratus clone R3-1109O21, W...    44   2.5    1
(AC007140) Homo sapiens chromosome 4, *** SEQUENCING IN PROG...    44   2.5    1
(AC171666) Bos taurus clone CH240-280D19, WORKING DRAFT SEQU...    40   5.4    2
(AC097331) Pan troglodytes clone RP43-53A2, WORKING DRAFT SE...    38   7.5    3
dna update 2009. 3.22
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM471698_4(AM471698|pid:none) Vitis vinifera contig VV78X231541....    34   1.4
(Q1DXH0) RecName: Full=Polyadenylate-binding protein, cytoplasmi...    34   1.4
DQ648528_1(DQ648528|pid:none) Bombyx mori spliceosomal protein o...    34   1.8
FM992689_636(FM992689|pid:none) Candida dubliniensis CD36 chromo...    33   3.0
CP000585_410(CP000585|pid:none) Ostreococcus lucimarinus CCE9901...    33   3.9
BT034281_1(BT034281|pid:none) Zea mays full-length cDNA clone ZM...    33   3.9
AK103490_1(AK103490|pid:none) Oryza sativa Japonica Group cDNA c...    33   3.9
AE014187_191(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   3.9
CR382138_1041(CR382138|pid:none) Debaryomyces hansenii strain CB...    32   5.2
AJ390490_1(AJ390490|pid:none) Candida albicans partial mRNA for ...    32   6.7
protein update 2009. 6. 2
PSORT 

 psg: 0.66  gvh: 0.33  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SLD776 is cyt
5' end seq. ID SLD776F
5' end seq. 
>SLD776F.Seq
CAATTAACATCGAATGTGTTATTTCATATGACGATATTAATAATTAGAAAAACATANATA
AATAGTATAAATAAGTATATAAATAAATATACAAATATATAAATAACCAAATATATATTA
ATAAACCAACCTTATAAATAAAATTAAAAAATAAGATGGCATCAAATTTACCACAAGAGA
GAAATCATGAAGCATGTCTATTAATTAGAGATTTAGATCCAATGGTTACAGAATCATTAT
TAATGGAATTATTTATT----------
Length of 5' end seq. 257
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -