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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD739
Library SL
(Link to library)
Clone ID SLD739
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01095-1
Original site URL
Representative seq. ID SLD739F
(Link to Original site)
Representative DNA sequence 
>SLD739 (SLD739Q) /CSM/SL/SLD7-B/SLD739Q.Seq.d/
AAGNAAATGAAAGAATAAATTATTTATTATTTTAATTATTTTTATTATTTTAAAAATNGT
TATATGTCAAAATAATACCCAATCTAAGTTATTACCACAACAACATCCAANAACATAAAC
AACAACAAACACAGCCTCACCACCACCACCATCACCATCAACAACACCAACAACXXXXXX
XXXX
sequence update 1999. 2.23
Translated Amino Acid sequence 
xnerinyllf*lfllf*KXLYVKIIPNLSYYHNNIQXHKQQQTQPHHHHHHHQQHQQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
kxmke*iiyyfnyfyyfknxymsk*ypi*vittttsxninnnkhslttttitinntn---


Frame B:
xk*knklfiiliifiilkxvicqnntqskllpqqhpxt*tttntasppppspsttpt---


Frame C:
xnerinyllf*lfllf*KXLYVKIIPNLSYYHNNIQXHKQQQTQPHHHHHHHQQHQQ---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD739 (SLD739Q) /CSM/SL/SLD7-B/SLD739Q.Seq.d/                         82   3e-15
SLA428 (SLA428Q) /CSM/SL/SLA4-B/SLA428Q.Seq.d/                         82   3e-15
SLA357 (SLA357Q) /CSM/SL/SLA3-C/SLA357Q.Seq.d/                         82   3e-15
AFK344 (AFK344Q) /CSM/AF/AFK3-B/AFK344Q.Seq.d/                         82   3e-15
VSB313 (VSB313Q) /CSM/VS/VSB3-A/VSB313Q.Seq.d/                         50   1e-05
AFF308 (AFF308Q) /CSM/AF/AFF3-A/AFF308Q.Seq.d/                         50   1e-05
VSF619 (VSF619Q) /CSM/VS/VSF6-A/VSF619Q.Seq.d/                         44   7e-04
SSK151 (SSK151Q) /CSM/SS/SSK1-C/SSK151Q.Seq.d/                         44   7e-04
SHE852 (SHE852Q) /CSM/SH/SHE8-C/SHE852Q.Seq.d/                         44   7e-04
SFI822 (SFI822Q) /CSM/SF/SFI8-A/SFI822Q.Seq.d/                         44   7e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061313) Dictyostelium discoideum slug cDNA, clone SLD739.       76   2e-13  2
(AU060144) Dictyostelium discoideum slug cDNA, clone SLA428.       56   4e-04  1
(AU060116) Dictyostelium discoideum slug cDNA, clone SLA357.       56   4e-04  1
(BJ327672) Dictyostelium discoideum cDNA clone:dda21h11, 5' ...    50   0.027  1
(AM979751) Sparus aurata EST, clone cDN14P0005A06, 5'-end se...    42   6.5    1
(FE224212) O053E12 Antarctic fish Dissostichus mawsoni adult...    42   6.5    1
(FE221128) O019B05 Antarctic fish Dissostichus mawsoni adult...    42   6.5    1
(FE203112) B385G09 Antarctic fish Dissostichus mawsoni adult...    42   6.5    1
(FE196180) B197B12 Antarctic fish Dissostichus mawsoni adult...    42   6.5    1
(FE195928) B193H07 Antarctic fish Dissostichus mawsoni adult...    42   6.5    1
dna update 2009. 3.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UJ6) RecName: Full=Uncharacterized transmembrane protein DDB...    33   4.0
protein update 2009. 1.22
PSORT 

 psg: 0.79  gvh: 0.26  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for SLD739 is mit
5' end seq. ID SLD739F
5' end seq. 
>SLD739F.Seq
AAGNAAATGAAAGAATAAATTATTTATTATTTTAATTATTTTTATTATTTTAAAAATNGT
TATATGTCAAAATAATACCCAATCTAAGTTATTACCACAACAACATCCAANAACATAAAC
AACAACAAACACAGCCTCACCACCACCACCATCACCATCAACAACACCAACAAC------
----
Length of 5' end seq. 174
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -