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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD735
Library SL
(Link to library)
Clone ID SLD735
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SLD735P
(Link to Original site)
Representative DNA sequence 
>SLD735 (SLD735Q) /CSM/SL/SLD7-B/SLD735Q.Seq.d/
TGCCCGTCCACCACATAACCTTTGTCGTGGTTTTGGTTGTCCAGAAGGCTCCCATTGNGA
AGTTCTTGAAAAACATCCAGTTTGTGTTAGAAATCATGTTCCACCACACCCACCACCACC
ACCACAAATTTGCGGTAGTGTAAATTGTGGTCCAGGTTATATTTGTACAATTATCAATGG
TCATCCAACTTGTATTCGTGGTGATGGTTATTTATGTAATCAAACCCGTTGTCCACACGA
TTATCAATGTGAAACCATTAGCACCAATATCGTXXXXXXXXXXCCATCATCATCAGCTTC
AAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTC
ATAAATAAAACTTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAGAACCAAACA
NTAAAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
ARPPHNLCRGFGCPEGSHXEVLEKHPVCVRNHVPPHPPPPPQICGSVNCGPGYICTIING
HPTCIRGDGYLCNQTRCPHDYQCETISTNI---

---IIISFKFSCIISCKLRKLRKLISHFINKTLIKKKKKKKKKSKNQTXK
Translated Amino Acid sequence (All Frames) 
Frame A:
cpstt*plswfwlsrrlplxss*ktsslc*kscsttptttttnlr*cklwsrlylynyqw
ssnlysw*wlfm*snplstrlsm*nh*hqyr---

---psssasssaassaassessesssats*ikl*skkkkkkkkkvrtkx*

Frame B:
ARPPHNLCRGFGCPEGSHXEVLEKHPVCVRNHVPPHPPPPPQICGSVNCGPGYICTIING
HPTCIRGDGYLCNQTRCPHDYQCETISTNI---

---hhhqlqvqlhhqlqaqkaqkahqplhk*nfdqkkkkkkkkk*epnxk

Frame C:
pvhhitfvvvlvvqkapixkflkniqfvleimfhhthhhhhkfavv*ivvqvifvqlsmv
iqlvfvvmviyvikpvvhtiinvkplapis---

---IIISFKFSCIISCKLRKLRKLISHFINKTLIKKKKKKKKKSKNQTXK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD735 (SLD735Q) /CSM/SL/SLD7-B/SLD735Q.Seq.d/                        442   e-123
SFH872 (SFH872Q) /CSM/SF/SFH8-C/SFH872Q.Seq.d/                        293   1e-78
SFH368 (SFH368Q) /CSM/SF/SFH3-C/SFH368Q.Seq.d/                        293   1e-78
SFG696 (SFG696Q) /CSM/SF/SFG6-D/SFG696Q.Seq.d/                        293   1e-78
SFF631 (SFF631Q) /CSM/SF/SFF6-B/SFF631Q.Seq.d/                        293   1e-78
SFF125 (SFF125Q) /CSM/SF/SFF1-B/SFF125Q.Seq.d/                        293   1e-78
SFE782 (SFE782Q) /CSM/SF/SFE7-D/SFE782Q.Seq.d/                        293   1e-78
SFC342 (SFC342Q) /CSM/SF/SFC3-B/SFC342Q.Seq.d/                        293   1e-78
SFC123 (SFC123Q) /CSM/SF/SFC1-A/SFC123Q.Seq.d/                        293   1e-78
CHB371 (CHB371Q) /CSM/CH/CHB3-C/CHB371Q.Seq.d/                        293   1e-78
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com...   293   e-176  4
(BJ376090) Dictyostelium discoideum cDNA clone:ddc21l05, 3' ...   293   e-127  2
(BJ400815) Dictyostelium discoideum cDNA clone:dds14o24, 3' ...   293   e-127  2
(BJ361062) Dictyostelium discoideum cDNA clone:ddc9k16, 5' e...   293   e-127  2
(BJ387814) Dictyostelium discoideum cDNA clone:dds5m05, 5' e...   293   e-127  2
(BJ386806) Dictyostelium discoideum cDNA clone:dds10d21, 5' ...   293   e-127  2
(BJ388903) Dictyostelium discoideum cDNA clone:dds16p18, 5' ...   293   e-127  2
(BJ387114) Dictyostelium discoideum cDNA clone:dds12m08, 5' ...   293   e-127  2
(BJ359524) Dictyostelium discoideum cDNA clone:ddc15o04, 5' ...   293   e-127  2
(BJ362799) Dictyostelium discoideum cDNA clone:ddc23f14, 5' ...   293   e-127  2
dna update 2009. 3.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       165   5e-40
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   165   5e-40
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    49   7e-05
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa...    41   0.015
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    39   0.056
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    39   0.056
Z98877_12(Z98877|pid:none) Caenorhabditis elegans YAC Y69H2, com...    37   0.28
AY540953_1(AY540953|pid:none) Strongylocentrotus purpuratus prot...    35   0.62
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg...    35   0.62
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    35   0.62
protein update 2009. 6. 2
PSORT 

 psg: 0.76  gvh: 0.51  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.03
 nuc: 0.33  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: plasma membrane
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SLD735 is nuc
5' end seq. ID SLD735F
5' end seq. 
>SLD735F.Seq
TGCCCGTCCACCACATAACCTTTGTCGTGGTTTTGGTTGTCCAGAAGGCTCCCATTGNGA
AGTTCTTGAAAAACATCCAGTTTGTGTTAGAAATCATGTTCCACCACACCCACCACCACC
ACCACAAATTTGCGGTAGTGTAAATTGTGGTCCAGGTTATATTTGTACAATTATCAATGG
TCATCCAACTTGTATTCGTGGTGATGGTTATTTATGTAATCAAACCCGTTGTCCACACGA
TTATCAATGTGAAACCATTAGCACCAATATCGT----------
Length of 5' end seq. 273
3' end seq. ID SLD735Z
3' end seq. 
>SLD735Z.Seq
----------CCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTGCAAGCTCAGA
AAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAACTTTGATCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGTAAGAACCAAACANTAAAA
Length of 3' end seq. 143
Connected seq. ID SLD735P
Connected seq. 
>SLD735P.Seq
TGCCCGTCCACCACATAACCTTTGTCGTGGTTTTGGTTGTCCAGAAGGCTCCCATTGNGA
AGTTCTTGAAAAACATCCAGTTTGTGTTAGAAATCATGTTCCACCACACCCACCACCACC
ACCACAAATTTGCGGTAGTGTAAATTGTGGTCCAGGTTATATTTGTACAATTATCAATGG
TCATCCAACTTGTATTCGTGGTGATGGTTATTTATGTAATCAAACCCGTTGTCCACACGA
TTATCAATGTGAAACCATTAGCACCAATATCGT----------CCATCATCATCAGCTTC
AAGTTCAGCTGCATCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTC
ATAAATAAAACTTTGATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAGAACCAAACA
NTAAAA
Length of connected seq. 416
Full length Seq ID -
Full length Seq. -
Length of full length seq. -