SLD713
Library SL
(Link to library)
Clone ID SLD713
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13922-1
Original site URL
Representative seq. ID SLD713P
(Link to Original site)
Representative DNA sequence
>SLD713 (SLD713Q) /CSM/SL/SLD7-A/SLD713Q.Seq.d/
AACCAATAAAAAAAAAATAAAAAAAAAAAAAAAATTAANATTTTTAAATTTTTATACAAC
CAAAACTATATAAATAAATATATATAAATATAATTACTATTTXXXXXXXXXXATTGTCAT
CTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAAC
TACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGA
ATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTT
AGGTTTATTATATTTAGCTGTTGTTGCTAATTAGA
sequence update 1999. 2.23
Translated Amino Acid sequence
tnkkkikkkkklxflnfyttkti*INIYKYNYY---

---IVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFD
EIQVLLGLLYLAVVAN*


Translated Amino Acid sequence (All Frames)
Frame A:
nq*kknkkkkkixifkflynqnyinkyi*i*llf---

---IVISILMDLVKESANFGMTLSSTTPMSFDISQNAGKLAGAVNELVKDTAHENNKIFD
EIQVLLGLLYLAVVAN*

Frame B:
tnkkkikkkkklxflnfyttkti*INIYKYNYY---

---lsslfswi**rnlqtlv*lslqlpqclsislkmlvnslvlsmn*lktlltkiikslm
kfkys*vyyi*llllir

Frame C:
pikkk*kkkkn*xf*ifiqpklyk*iyiniiti---

---chlyshgfskgicklwydslfnypnvfrylskcw*trwccq*is*rhcsrk**nl**
nsstlrfiifsccc*l

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH396 (SSH396Q) /CSM/SS/SSH3-D/SSH396Q.Seq.d/ 442 e-123
SSG310 (SSG310Q) /CSM/SS/SSG3-A/SSG310Q.Seq.d/ 442 e-123
SSC538 (SSC538Q) /CSM/SS/SSC5-B/SSC538Q.Seq.d/ 442 e-123
SSC534 (SSC534Q) /CSM/SS/SSC5-B/SSC534Q.Seq.d/ 442 e-123
SLI758 (SLI758Q) /CSM/SL/SLI7-C/SLI758Q.Seq.d/ 442 e-123
SLD713 (SLD713Q) /CSM/SL/SLD7-A/SLD713Q.Seq.d/ 442 e-123
SLC832 (SLC832Q) /CSM/SL/SLC8-B/SLC832Q.Seq.d/ 442 e-123
SLA529 (SLA529Q) /CSM/SL/SLA5-B/SLA529Q.Seq.d/ 434 e-121
SSE278 (SSE278Q) /CSM/SS/SSE2-D/SSE278Q.Seq.d/ 420 e-117
SSB757 (SSB757Q) /CSM/SS/SSB7-C/SSB757Q.Seq.d/ 414 e-115

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AF222688) Dictyostelium discoideum dynacortin (dct) mRNA, c... 442 e-120 1
(AU053491) Dictyostelium discoideum slug cDNA, clone SLI758. 442 e-120 1
(AU052665) Dictyostelium discoideum slug cDNA, clone SLD713. 442 e-120 1
(AU038195) Dictyostelium discoideum slug cDNA, clone SSH396. 442 e-120 1
(AU034407) Dictyostelium discoideum slug cDNA, clone SLC832. 442 e-120 1
(C94037) Dictyostelium discoideum slug cDNA, clone SSG310. 442 e-120 1
(C84047) Dictyostelium discoideum slug cDNA, clone SSC538. 442 e-120 1
(C84045) Dictyostelium discoideum slug cDNA, clone SSC534. 442 e-120 1
(AU060182) Dictyostelium discoideum slug cDNA, clone SLA529. 434 e-118 1
(AU037774) Dictyostelium discoideum slug cDNA, clone SSE278. 420 e-113 1
dna update 2009. 3.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF222688_1(AF222688|pid:none) Dictyostelium discoideum dynacorti... 117 9e-26
(Q9Y8H3) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 33 4.0
CP001032_32(CP001032|pid:none) Opitutus terrae PB90-1, complete ... 32 5.2
(Q96VA4) RecName: Full=1,4-alpha-glucan-branching enzyme; ... 32 8.9

protein update 2009. 1.22
PSORT

psg: 0.94 gvh: 0.39 alm: 0.30 top: 0.63 tms: 0.07 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.26 leu: 0.53 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SLD713 is nuc

5' end seq. ID SLD713F
5' end seq.
>SLD713F.Seq
AACCAATAAAAAAAAAATAAAAAAAAAAAAAAAATTAANATTTTTAAATTTTTATACAAC
CAAAACTATATAAATAAATATATATAAATATAATTACTATTT----------
Length of 5' end seq. 102
3' end seq. ID SLD713Z
3' end seq.
>SLD713Z.Seq
----------ATTGTCATCTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGG
TATGACTCTCTCTTCAACTACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACT
CGCTGGTGCTGTCAATGAATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGA
TGAAATTCAAGTACTCTTAGGTTTATTATATTTAGCTGTTGTTGCTAATTAGA
Length of 3' end seq. 223
Connected seq. ID SLD713P
Connected seq.
>SLD713P.Seq
AACCAATAAAAAAAAAATAAAAAAAAAAAAAAAATTAANATTTTTAAATTTTTATACAAC
CAAAACTATATAAATAAATATATATAAATATAATTACTATTT----------ATTGTCAT
CTCTATTCTCATGGATTTAGTAAAGGAATCTGCAAACTTTGGTATGACTCTCTCTTCAAC
TACCCCAATGTCTTTCGATATCTCTCAAAATGCTGGTAAACTCGCTGGTGCTGTCAATGA
ATTAGTTAAAGACACTGCTCACGAAAATAATAAAATCTTTGATGAAATTCAAGTACTCTT
AGGTTTATTATATTTAGCTGTTGTTGCTAATTAGA
Length of connected seq. 325
Full length Seq ID -
Full length Seq. -
Length of full length seq. -