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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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SLD704
Library SL
(Link to library)
Clone ID SLD704
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15434-1
Original site URL
Representative seq. ID SLD704Z
(Link to Original site)
Representative DNA sequence 
>SLD704 (SLD704Q) /CSM/SL/SLD7-A/SLD704Q.Seq.d/
XXXXXXXXXXAAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAA
NTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAA
TCCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAA
AATCTTTTGTTTAATAAATATATAAAACTTTTTTAACA
sequence update 1998. 6.16
Translated Amino Acid sequence 
---EYPLGVHFLPKILDEEXARLHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*n
llfnkyiklf*
Translated Amino Acid sequence (All Frames) 
Frame A:
---ripircplltkdfr*rxcsftfrsirc*inyph*ktirifisssrwsiqs*slqilk
sfv**iyktflt


Frame B:
---EYPLGVHFLPKILDEEXARLHLDQLGAKLTTLTEKQSEYLSVPVAGPYKVDHYRY*n
llfnkyiklf*


Frame C:
---nth*vstsyqrf*mkxllvyi*in*vln*lpslknnpniyqfqslvhtklittdiki
fclini*nffn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE832 (VSE832Q) /CSM/VS/VSE8-B/VSE832Q.Seq.d/                        406   e-113
VSD736 (VSD736Q) /CSM/VS/VSD7-B/VSD736Q.Seq.d/                        406   e-113
SSF788 (SSF788Q) /CSM/SS/SSF7-D/SSF788Q.Seq.d/                        406   e-113
SLK754 (SLK754Q) /CSM/SL/SLK7-C/SLK754Q.Seq.d/                        406   e-113
SLK569 (SLK569Q) /CSM/SL/SLK5-C/SLK569Q.Seq.d/                        406   e-113
SLJ754 (SLJ754Q) /CSM/SL/SLJ7-C/SLJ754Q.Seq.d/                        406   e-113
SLJ279 (SLJ279Q) /CSM/SL/SLJ2-D/SLJ279Q.Seq.d/                        406   e-113
SLJ116 (SLJ116Q) /CSM/SL/SLJ1-A/SLJ116Q.Seq.d/                        406   e-113
SLI719 (SLI719Q) /CSM/SL/SLI7-A/SLI719Q.Seq.d/                        406   e-113
SLI580 (SLI580Q) /CSM/SL/SLI5-D/SLI580Q.Seq.d/                        406   e-113
own update 2001.10.31
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU285050) Dictyostelium discoideum gamete cDNA clone:FCL-AC...   406   e-109  1
(AU284941) Dictyostelium discoideum gamete cDNA clone:FC-BQ1...   406   e-109  1
(AU284257) Dictyostelium discoideum gamete cDNA clone:FC-AE1...   406   e-109  1
(AU264488) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-109  1
(AU263412) Dictyostelium discoideum vegetative cDNA clone:VS...   406   e-109  1
(AU054123) Dictyostelium discoideum slug cDNA, clone SLK754.      406   e-109  1
(AU054085) Dictyostelium discoideum slug cDNA, clone SLK569.      406   e-109  1
(AU053824) Dictyostelium discoideum slug cDNA, clone SLJ754.      406   e-109  1
(AU053634) Dictyostelium discoideum slug cDNA, clone SLJ279.      406   e-109  1
(AU053562) Dictyostelium discoideum slug cDNA, clone SLJ116.      406   e-109  1
dna update 2009. 3.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X12523_1(X12523|pid:none) D. discoideum mRNA fragment for S-aden...   114   1e-24
A27655(A27655;S06394) adenosylhomocysteinase (EC 3.3.1.1) - slim...   111   7e-24
(O13639) RecName: Full=Adenosylhomocysteinase;          Short=Ad...    90   3e-17
DQ167408_1(DQ167408|pid:none) Volvariella volvacea S-adenosyl-L-...    87   2e-16
CP000820_110(CP000820|pid:none) Frankia sp. EAN1pec, complete ge...    86   3e-16
DQ676850_1(DQ676850|pid:none) Pimephales promelas S-adenosylhomo...    86   3e-16
AY398307_1(AY398307|pid:none) Danio rerio clone RK113A3C03 S-ade...    84   1e-15
(Q12663) RecName: Full=Adenosylhomocysteinase;          Short=Ad...    84   2e-15
CP001101_1572(CP001101|pid:none) Chlorobium phaeobacteroides BS1...    84   2e-15
CP000249_4405(CP000249|pid:none) Frankia sp. CcI3, complete geno...    83   3e-15
protein update 2009. 6. 2
PSORT 

 psg: 0.44  gvh: 0.38  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.06  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SLD704 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD704Z
3' end seq. 
>SLD704Z.Seq
----------AAGAATACCCATTAGGTGTCCACTTCTTACCAAAGATTTTAGATGAAGAA
NTTGCTCGTTTACATTTAGATCAATTAGGTGCTAAATTAACTACCCTCACTGAAAAACAA
TCCGAATATTTATCAGTTCCAGTCGCTGGTCCATACAAAGTTGATCACTACAGATATTAA
AATCTTTTGTTTAATAAATATATAAAACTTTTTTAACA
Length of 3' end seq. 208
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -