SLD676
Library SL
(Link to library)
Clone ID SLD676
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13837-1
Original site URL
Representative seq. ID SLD676F
(Link to Original site)
Representative DNA sequence
>SLD676 (SLD676Q) /CSM/SL/SLD6-D/SLD676Q.Seq.d/
AAAAAACTTAAATGAAAATTAACTCAATTTTATTTATTATTCTATTAATTTTATTTTACA
ATGTTGTAAATAGTAGTTGTCCAAATTGTTTGATAGAAAATGACATTTGTGACTCAGGAG
GAACATGTAGTGATGAGACAAAATGCTTGAGCAATAACTCTTCTTCCCCAAGATGTACCA
AATACTTGAAAAGTGGTGATAAATGTGATCCAGGTGTTTATTTATGTATTCTTGGTACTA
GTTGTATTTTGGATAAAAGTAATGTTTATAGATGTTTGGATTACGXXXXXXXXXX
sequence update 1999. 2.23
Translated Amino Acid sequence
kt*MKINSILFIILLILFYNVVNSSCPNCLIENDICDSGGTCSDETKCLSNNSSSPRCTK
YLKSGDKCDPGVYLCILGTSCILDKSNVYRCLDY---


Translated Amino Acid sequence (All Frames)
Frame A:
kklk*kltqfyllfy*fyftml*ivvvqiv**kmtfvtqeehvvmrqna*aitllpqdvp
nt*kvvinviqvfiyvflvlvvfwikvmfidvwi---


Frame B:
knlnen*lnfiyysinfilqcck**lsklfdrk*hl*lrrnm***dkmleq*lffpkmyq
ilekw**m*srclfmyswy*lyfg*k*cl*mfgl---


Frame C:
kt*MKINSILFIILLILFYNVVNSSCPNCLIENDICDSGGTCSDETKCLSNNSSSPRCTK
YLKSGDKCDPGVYLCILGTSCILDKSNVYRCLDY---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLD676 (SLD676Q) /CSM/SL/SLD6-D/SLD676Q.Seq.d/ 450 e-126
SSK554 (SSK554Q) /CSM/SS/SSK5-C/SSK554Q.Seq.d/ 434 e-121
VFO133 (VFO133Q) /CSM/VF/VFO1-B/VFO133Q.Seq.d/ 34 1.1
VFM874 (VFM874Q) /CSM/VF/VFM8-D/VFM874Q.Seq.d/ 34 1.1
VFK231 (VFK231Q) /CSM/VF/VFK2-B/VFK231Q.Seq.d/ 34 1.1
VFH236 (VFH236Q) /CSM/VF/VFH2-B/VFH236Q.Seq.d/ 34 1.1
VFH108 (VFH108Q) /CSM/VF/VFH1-A/VFH108Q.Seq.d/ 34 1.1
VFG462 (VFG462Q) /CSM/VF/VFG4-C/VFG462Q.Seq.d/ 34 1.1
VFA533 (VFA533Q) /CSM/VF/VFA5-B/VFA533Q.Seq.d/ 34 1.1
VFA475 (VFA475Q) /CSM/VF/VFA4-D/VFA475Q.Seq.d/ 34 1.1

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU061284) Dictyostelium discoideum slug cDNA, clone SLD676. 448 e-131 2
(AU074389) Dictyostelium discoideum slug cDNA, clone SSK554. 280 1e-80 2
(AU272076) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 96 8e-16 1
(AL096710) Human DNA sequence from clone RP1-61B2 on chromos... 48 0.18 1
(DU798184) fv01_fp012q434 Foamy virus vector integration jun... 48 0.18 1
(BH131935) ENTNZ21TR Entamoeba histolytica Sheared DNA Entam... 36 0.23 2
(AC232013) Solanum tuberosum strain Diploid genotype RH89-03... 38 0.45 3
(AM476275) Vitis vinifera contig VV78X017941.2, whole genome... 46 0.70 1
(CR354389) Zebrafish DNA sequence from clone CH211-220J14 in... 44 2.8 1
(EA714492) Sequence 93371 from patent US 7365185. 44 2.8 1
dna update 2009. 3.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB287423_1(AB287423|pid:none) Entamoeba dispar igl1 mRNA for int... 36 0.47
CP001239_10(CP001239|pid:none) Borrelia afzelii ACA-1 plasmid lp... 35 0.79
BT045135_1(BT045135|pid:none) Salmo salar clone ssal-rgf-513-057... 35 0.80
AY289606_1(AY289606|pid:none) Danio rerio progranulin-b mRNA, co... 35 0.80
BC096854_1(BC096854|pid:none) Danio rerio granulin b, mRNA (cDNA... 35 0.80
AB299015_1(AB299015|pid:none) Haemaphysalis longicornis mRNA for... 34 1.8
AB009671_2(AB009671|pid:none) Homo sapiens mRNA for MDC2 alpha, ... 33 3.0
(Q9P0K1) RecName: Full=ADAM 22; AltName: Full=A disintegrin and ... 33 3.0
S00670(S00670;A26637) neurogenic repetitive locus delta protein ... 33 3.0
A31246(A31246)neurogenic protein Delta precursor - fruit fly (Dr... 33 3.0
protein update 2009. 1.22
PSORT

psg: 1.01 gvh: 0.71 alm: 0.42 top: 0.07 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: extracellular, including cell wall
20.0 %: cytoplasmic
12.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: nuclear

>> prediction for SLD676 is exc

5' end seq. ID SLD676F
5' end seq.
>SLD676F.Seq
AAAAAACTTAAATGAAAATTAACTCAATTTTATTTATTATTCTATTAATTTTATTTTACA
ATGTTGTAAATAGTAGTTGTCCAAATTGTTTGATAGAAAATGACATTTGTGACTCAGGAG
GAACATGTAGTGATGAGACAAAATGCTTGAGCAATAACTCTTCTTCCCCAAGATGTACCA
AATACTTGAAAAGTGGTGATAAATGTGATCCAGGTGTTTATTTATGTATTCTTGGTACTA
GTTGTATTTTGGATAAAAGTAATGTTTATAGATGTTTGGATTACG----------
Length of 5' end seq. 285
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -