SLD662
Library SL
(Link to library)
Clone ID SLD662
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10091-1
Original site URL
Representative seq. ID SLD662F
(Link to Original site)
Representative DNA sequence
>SLD662 (SLD662Q) /CSM/SL/SLD6-C/SLD662Q.Seq.d/
AAAAATGATGATTAAAAATTTCATTTTAACTGTATTTTTATTAGTTTGCATTANTGCTTT
TGTAAACTCTCAAAGTACTGTTGGTTTAAGTGGTGCAGCATCAGTATCATTGGATGGAGA
TGTAATCCGTTCATAGTGTTTATACTGATAGTAATATACTTTCACCATCATTTACATTAA
CAGGTGTTTCAGTTGGTGGAACTATTTTAAATGGTGGAAAGGGTGGTAGTGTTTCAGTTG
ATACATCAATCXXXXXXXXXX
sequence update 1999. 2.23
Translated Amino Acid sequence
kndd*KFHFNCIFISLHXCFCKLSKYCWFKWCSISIIGWRCNPFIVFILIVIYFHHHLH*
qvfqlvelf*mvervvvfqlihq---


Translated Amino Acid sequence (All Frames)
Frame A:
kndd*KFHFNCIFISLHXCFCKLSKYCWFKWCSISIIGWRCNPFIVFILIVIYFHHHLH*
qvfqlvelf*mvervvvfqlihq---


Frame B:
kmmiknfiltvfllvcixafvnsqstvglsgaasvsldgdvirs*cly***ytftiiyin
rcfswwnyfkwwkgw*cfs*yin---


Frame C:
k**lkisf*lyfy*falxll*tlkvllv*vvqhqyhwmem*svhsvytdsnilspsftlt
gvsvggtilnggkggsvsvdts---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLD662 (SLD662Q) /CSM/SL/SLD6-C/SLD662Q.Seq.d/ 492 e-138
SLB765 (SLB765Q) /CSM/SL/SLB7-C/SLB765Q.Seq.d/ 476 e-134
SFJ819 (SFJ819Q) /CSM/SF/SFJ8-A/SFJ819Q.Seq.d/ 38 0.063
VSE846 (VSE846Q) /CSM/VS/VSE8-B/VSE846Q.Seq.d/ 36 0.25
VFL634 (VFL634Q) /CSM/VF/VFL6-B/VFL634Q.Seq.d/ 36 0.25
VFE155 (VFE155Q) /CSM/VF/VFE1-C/VFE155Q.Seq.d/ 36 0.25
SSG811 (SSG811Q) /CSM/SS/SSG8-A/SSG811Q.Seq.d/ 36 0.25
SFJ556 (SFJ556Q) /CSM/SF/SFJ5-C/SFJ556Q.Seq.d/ 36 0.25
SFI326 (SFI326Q) /CSM/SF/SFI3-B/SFI326Q.Seq.d/ 36 0.25
SFD438 (SFD438Q) /CSM/SF/SFD4-B/SFD438Q.Seq.d/ 36 0.25

own update 2003.10.10
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU061277) Dictyostelium discoideum slug cDNA, clone SLD662. 492 e-135 1
(AU060859) Dictyostelium discoideum slug cDNA, clone SLB765. 262 e-128 2
(DL235728) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 50 0.039 1
(DD164427) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 50 0.039 1
(AX695647) Sequence 1274 from Patent WO03008583. 50 0.039 1
(AC063962) Homo sapiens chromosome 10 clone RP11-222G7, comp... 50 0.039 1
(AC128518) Rattus norvegicus clone CH230-217M24, *** SEQUENC... 42 0.13 2
(AC106186) Rattus norvegicus clone CH230-137D14, WORKING DRA... 42 0.13 2
(AC112354) Rattus norvegicus clone CH230-291B17, *** SEQUENC... 42 0.14 2
(AC110831) Rattus norvegicus clone CH230-242B20, *** SEQUENC... 42 0.15 2
dna update 2009. 3.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP005822_12(AP005822|pid:none) Oryza sativa Japonica Group genom... 34 1.8

protein update 2009. 1.22
PSORT

psg: 0.90 gvh: 0.55 alm: 0.27 top: 0.53 tms: 0.07 mit: 0.45 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.16 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: mitochondrial
20.0 %: cytoplasmic
12.0 %: Golgi
12.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SLD662 is end

5' end seq. ID SLD662F
5' end seq.
>SLD662F.Seq
AAAAATGATGATTAAAAATTTCATTTTAACTGTATTTTTATTAGTTTGCATTANTGCTTT
TGTAAACTCTCAAAGTACTGTTGGTTTAAGTGGTGCAGCATCAGTATCATTGGATGGAGA
TGTAATCCGTTCATAGTGTTTATACTGATAGTAATATACTTTCACCATCATTTACATTAA
CAGGTGTTTCAGTTGGTGGAACTATTTTAAATGGTGGAAAGGGTGGTAGTGTTTCAGTTG
ATACATCAATC----------
Length of 5' end seq. 251
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -