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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD655
Library SL
(Link to library)
Clone ID SLD655
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15611-1
Original site URL
Representative seq. ID SLD655F
(Link to Original site)
Representative DNA sequence 
>SLD655 (SLD655Q) /CSM/SL/SLD6-C/SLD655Q.Seq.d/
CTTATAATTGGTTAATTGATGTACTCGGACTCTATAGACCAGTAGTTTGGGAATATGCAA
GATTAAATTTAACTCATACAGTTTTATCAAAAAGAAAGATTATTACTTTAGTTCAAAATA
AAATTGTAAATGGTTGGGATGATCCAAGATTAAGTACATTAAATGCATTCCGTAGAAAAG
GTTATACACCAGAAGCAATTAATTTATTATGTGATACAATTGGTGTAACACGTACTAATG
GTACAACCATTTCATATGAATTATTAGAXXXXXXXXXX
sequence update 1999. 2.23
Translated Amino Acid sequence 
YNWLIDVLGLYRPVVWEYARLNLTHTVLSKRKIITLVQNKIVNGWDDPRLSTLNAFRRKG
YTPEAINLLCDTIGVTRTNGTTISYELL---
Translated Amino Acid sequence (All Frames) 
Frame A:
liig*lmysdsidq*fgnmqd*i*liqfyqkerlll*fkikl*mvgmiqd*vh*mhsvek
vihqkqliyyviqlv*hvlmvqpfhmny*---


Frame B:
l*lvn*ctrtl*tsslgickikfnsysfikkkdyyfssk*nckwlg*skikyikcip*kr
lytrsn*fim*ynwcnty*wynhfi*ii---


Frame C:
YNWLIDVLGLYRPVVWEYARLNLTHTVLSKRKIITLVQNKIVNGWDDPRLSTLNAFRRKG
YTPEAINLLCDTIGVTRTNGTTISYELL---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD655 (SLD655Q) /CSM/SL/SLD6-C/SLD655Q.Seq.d/                        531   e-150
AHE465 (AHE465Q) /CSM/AH/AHE4-C/AHE465Q.Seq.d/                        260   1e-68
VHH810 (VHH810Q) /CSM/VH/VHH8-A/VHH810Q.Seq.d/                        252   2e-66
VHA831 (VHA831Q) /CSM/VH/VHA8-B/VHA831Q.Seq.d/                        252   2e-66
AHL480 (AHL480Q) /CSM/AH/AHL4-D/AHL480Q.Seq.d/                        252   2e-66
VHD314 (VHD314Q) /CSM/VH/VHD3-A/VHD314Q.Seq.d/                        248   4e-65
VHI552 (VHI552Q) /CSM/VH/VHI5-C/VHI552Q.Seq.d/                        246   1e-64
VHA462 (VHA462Q) /CSM/VH/VHA4-C/VHA462Q.Seq.d/                        246   1e-64
SHA791 (SHA791Q) /CSM/SH/SHA7-D/SHA791Q.Seq.d/                        244   6e-64
VHE460 (VHE460Q) /CSM/VH/VHE4-C/VHE460Q.Seq.d/                        242   2e-63
own update 2002.12.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061273) Dictyostelium discoideum slug cDNA, clone SLD655.      531   e-147  1
(BJ350334) Dictyostelium discoideum cDNA clone:dda39b18, 3' ...   248   1e-64  2
(BJ441216) Dictyostelium discoideum cDNA clone:ddv46d04, 3' ...   252   6e-63  1
(BJ436851) Dictyostelium discoideum cDNA clone:ddv32n08, 3' ...   252   6e-63  1
(BJ354544) Dictyostelium discoideum cDNA clone:dda53p20, 3' ...   252   6e-63  1
(BJ438514) Dictyostelium discoideum cDNA clone:ddv37l03, 3' ...   248   9e-62  1
(BJ442013) Dictyostelium discoideum cDNA clone:ddv48g13, 3' ...   246   4e-61  1
(BJ436597) Dictyostelium discoideum cDNA clone:ddv31l16, 3' ...   246   4e-61  1
(BJ403647) Dictyostelium discoideum cDNA clone:dds25f23, 3' ...   244   1e-60  1
(BJ439153) Dictyostelium discoideum cDNA clone:ddv39h16, 3' ...   242   6e-60  1
dna update 2009. 3.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P14325) RecName: Full=Probable glutaminyl-tRNA synthetase;     ...   183   1e-45
(P52780) RecName: Full=Glutaminyl-tRNA synthetase;          EC=6...   107   1e-22
CR954201_158(CR954201|pid:none) Ostreococcus tauri strain OTTH05...   104   8e-22
AP009389_2866(AP009389|pid:none) Pelotomaculum thermopropionicum...   101   7e-21
AC079374_4(AC079374|pid:none) Arabidopsis thaliana chromosome 1 ...   101   7e-21
D86383(D86383)probable glutaminyl-tRNA synthetase (glnrs) [impor...   101   7e-21
CP001574_289(CP001574|pid:none) Micromonas sp. RCC299 chromosome...   101   7e-21
AF358445_1(AF358445|pid:none) Schistosoma mansoni glutaminyl-tRN...   101   9e-21
CR450703_4(CR450703|pid:none) Zebrafish DNA sequence from clone ...   100   1e-20
CP000473_4952(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   100   2e-20
protein update 2009. 6. 2
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SLD655 is cyt
5' end seq. ID SLD655F
5' end seq. 
>SLD655F.Seq
CTTATAATTGGTTAATTGATGTACTCGGACTCTATAGACCAGTAGTTTGGGAATATGCAA
GATTAAATTTAACTCATACAGTTTTATCAAAAAGAAAGATTATTACTTTAGTTCAAAATA
AAATTGTAAATGGTTGGGATGATCCAAGATTAAGTACATTAAATGCATTCCGTAGAAAAG
GTTATACACCAGAAGCAATTAATTTATTATGTGATACAATTGGTGTAACACGTACTAATG
GTACAACCATTTCATATGAATTATTAGA----------
Length of 5' end seq. 268
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -