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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD591
Library SL
(Link to library)
Clone ID SLD591
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID SLD591Z
(Link to Original site)
Representative DNA sequence 
>SLD591 (SLD591Q) /CSM/SL/SLD5-D/SLD591Q.Seq.d/
XXXXXXXXXXGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACT
CTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGAT
AAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATT
AGATTTCAGAGAGTTTATCAAACATAAAAA
sequence update 1998. 5.14
Translated Amino Acid sequence 
---RVSPLKLVVLPSRKSLSNSSIPPASLVTVFIKPLKIRLNISASRNQDQLRLKFNKLD
FREFIKHK
Translated Amino Acid sequence (All Frames) 
Frame A:
---keyhhsnwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqeikin*glnsin*
iseslsnik


Frame B:
---ksittqtgraalekitlkfidtsskfghglhqtaedktkyfgvkksrstka*iq*ir
fqrvyqt*k


Frame C:
---RVSPLKLVVLPSRKSLSNSSIPPASLVTVFIKPLKIRLNISASRNQDQLRLKFNKLD
FREFIKHK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD591 (SLD591Q) /CSM/SL/SLD5-D/SLD591Q.Seq.d/                        396   e-110
VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                        381   e-105
SLH604 (SLH604Q) /CSM/SL/SLH6-A/SLH604Q.Seq.d/                        381   e-105
SLH567 (SLH567Q) /CSM/SL/SLH5-C/SLH567Q.Seq.d/                        381   e-105
SLH448 (SLH448Q) /CSM/SL/SLH4-B/SLH448Q.Seq.d/                        381   e-105
SLH434 (SLH434Q) /CSM/SL/SLH4-B/SLH434Q.Seq.d/                        381   e-105
SLG735 (SLG735Q) /CSM/SL/SLG7-B/SLG735Q.Seq.d/                        381   e-105
SLG542 (SLG542Q) /CSM/SL/SLG5-B/SLG542Q.Seq.d/                        381   e-105
SLG451 (SLG451Q) /CSM/SL/SLG4-C/SLG451Q.Seq.d/                        381   e-105
SLF493 (SLF493Q) /CSM/SL/SLF4-D/SLF493Q.Seq.d/                        381   e-105
own update 2001. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052612) Dictyostelium discoideum slug cDNA, clone SLD591.      394   e-106  1
(AU040016) Dictyostelium discoideum slug cDNA, clone SLH448.      365   e-100  2
(AU040010) Dictyostelium discoideum slug cDNA, clone SLH434.      365   e-100  2
(AU039914) Dictyostelium discoideum slug cDNA, clone SLG735.      365   e-100  2
(AU039555) Dictyostelium discoideum slug cDNA, clone SLE743.      365   e-100  2
(AU033990) Dictyostelium discoideum slug cDNA, clone SLB704.      365   e-100  2
(AU039330) Dictyostelium discoideum slug cDNA, clone SLH567.      365   e-100  2
(AU034006) Dictyostelium discoideum slug cDNA, clone SLB721.      365   e-100  2
(AU034868) Dictyostelium discoideum slug cDNA, clone SLE619.      365   e-100  2
(AU039537) Dictyostelium discoideum slug cDNA, clone SLE715.      365   e-100  2
dna update 2009. 3.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   103   2e-21
EU999182_1(EU999182|pid:none) Artemia franciscana ribosomal prot...    62   5e-09
AM980946_1(AM980946|pid:none) Brachionus plicatilis partial mRNA...    62   5e-09
CP000581_50(CP000581|pid:none) Ostreococcus lucimarinus CCE9901 ...    62   8e-09
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...    62   8e-09
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica...    61   1e-08
AB374542_1(AB374542|pid:none) Solea senegalensis RPL3 mRNA for r...    60   2e-08
AB099068_1(AB099068|pid:none) Bos taurus mRNA for similar to rib...    59   4e-08
BC151555_1(BC151555|pid:none) Bos taurus ribosomal protein L3, m...    59   4e-08
(P39872) RecName: Full=60S ribosomal protein L3;  &BC102253_1(BC...    59   4e-08
protein update 2009. 6. 2
PSORT 

 psg: 0.65  gvh: 0.50  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.59  mip: 0.08
 nuc: 0.12  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 92.0 %: mitochondrial
	  8.0 %: nuclear

>> prediction for SLD591 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD591Z
3' end seq. 
>SLD591Z.Seq
----------GAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACT
CTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGAT
AAGACTAAATATTTCGGCGTCAAGAAATCAAGATCAACTAAGGCTTAAATTCAATAAATT
AGATTTCAGAGAGTTTATCAAACATAAAAA
Length of 3' end seq. 200
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -