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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD561
Library SL
(Link to library)
Clone ID SLD561
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16255-1
Original site URL
Representative seq. ID SLD561Z
(Link to Original site)
Representative DNA sequence 
>SLD561 (SLD561Q) /CSM/SL/SLD5-C/SLD561Q.Seq.d/
XXXXXXXXXXTATGTTGATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATT
TGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTA
TTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATC
ATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGAC
TTTACAAAAAAAAAAAA
sequence update 1998. 5.14
Translated Amino Acid sequence 
---MLMKKILMKISMVMMNLKLMLKVISKKMISKKNMHFIKLNFFS*knnnnnlitnhyh
q**hynitlitilffniqrlykkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---MLMKKILMKISMVMMNLKLMLKVISKKMISKKNMHFIKLNFFS*knnnnnlitnhyh
q**hynitlitilffniqrlykkkk


Frame B:
---c**rry**rfqw***i*n*c*r*fprr*frrricilln*tffhkkiiiii**liiii
nnniiill**qyfflifkdftkkk


Frame C:
---vdeedidedfngndefeidvegdfqeddfeeeyafy*iklffikk****fnn*slss
iitl*yyfnnntff*ysktlqkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM572 (SSM572Q) /CSM/SS/SSM5-C/SSM572Q.Seq.d/                        240   8e-63
SSM396 (SSM396Q) /CSM/SS/SSM3-D/SSM396Q.Seq.d/                        240   8e-63
SSL605 (SSL605Q) /CSM/SS/SSL6-A/SSL605Q.Seq.d/                        240   8e-63
SSL330 (SSL330Q) /CSM/SS/SSL3-B/SSL330Q.Seq.d/                        240   8e-63
SSL212 (SSL212Q) /CSM/SS/SSL2-A/SSL212Q.Seq.d/                        240   8e-63
SSK815 (SSK815Q) /CSM/SS/SSK8-A/SSK815Q.Seq.d/                        240   8e-63
SSJ349 (SSJ349Q) /CSM/SS/SSJ3-C/SSJ349Q.Seq.d/                        240   8e-63
SSJ312 (SSJ312Q) /CSM/SS/SSJ3-A/SSJ312Q.Seq.d/                        240   8e-63
SSJ101 (SSJ101Q) /CSM/SS/SSJ1-A/SSJ101Q.Seq.d/                        240   8e-63
SSH773 (SSH773Q) /CSM/SS/SSH7-D/SSH773Q.Seq.d/                        240   8e-63
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU052592) Dictyostelium discoideum slug cDNA, clone SLD561.      206   3e-53  2
(AU054168) Dictyostelium discoideum slug cDNA, clone SLK851.      206   3e-53  2
(AU038671) Dictyostelium discoideum slug cDNA, clone SSL330.      206   3e-53  2
(AU053081) Dictyostelium discoideum slug cDNA, clone SLF641.      206   3e-53  2
(AU052708) Dictyostelium discoideum slug cDNA, clone SLD809.      206   3e-53  2
(AU053627) Dictyostelium discoideum slug cDNA, clone SLJ259.      206   3e-53  2
(AU054174) Dictyostelium discoideum slug cDNA, clone SLK859.      206   4e-53  2
(AU053718) Dictyostelium discoideum slug cDNA, clone SLJ549.      206   4e-53  2
(AU039597) Dictyostelium discoideum slug cDNA, clone SLE815.      206   4e-53  2
(AU034422) Dictyostelium discoideum slug cDNA, clone SLC852.      206   4e-53  2
dna update 2009. 3.17
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 138,196,834
protein update 2009. 6. 2
PSORT 

 psg: 0.90  gvh: 0.46  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SLD561 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD561Z
3' end seq. 
>SLD561Z.Seq
----------TATGTTGATGAAGAAGATATTGATGAAGATTTCAATGGTAATGATGAATT
TGAAATTGATGTTGAAGGTGATTTCCAAGAAGATGATTTCGAAGAAGAATATGCATTTTA
TTAAATTAAACTTTTTTTCATAAAAAAATAATAATAATAATTTAATAACTAATCATTATC
ATCAATAATAACATTATAATATTACTTTAATAACAATACTTTTTTTTAATATTCAAAGAC
TTTACAAAAAAAAAAAA
Length of 3' end seq. 247
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -