AFK274
Library AF
(Link to library)
Clone ID AFK274
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFK274P
(Link to Original site)
Representative DNA sequence
>AFK274 (AFK274Q) /CSM/AF/AFK2-D/AFK274Q.Seq.d/
ACTGTTGGCCTACTGGAATTTCTCCAATGCATCATATTTATAATTATATCTTTTTTGTTT
AATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTG
TTTTCAATTTTGCATTATCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAAT
CAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATA
CTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTC
GTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTC
TCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTAT
TACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTG
GTCCAGATGTTTGTGGTGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGA
ACCATTTAATCAAGAAAGAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACA
CTTTGGTCATTTCACCAGATAXXXXXXXXXXTCCCAGCTTCAATCGTTGATCCAGAAGCT
GTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCC
AATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGT
GAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTC
TTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTT
AACAATATGATCGTCNCCGACTCTGTCGAANAAGCTAAAGATTTNTNTGAAAAGACCTTT
GTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAA
NAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAA
GAAGCTGATGAAGAAGAAGAAGAAGTCGCTTAAGAAGATTTAGTTAAAACTTAGNCAAAA
AAGAAGAAGTCAAAAAATCAACCAAAAAAGT
sequence update 2001. 6. 1
Translated Amino Acid sequence
cwptgispmhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWES
RWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVL
QYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKN
HLIKKEINKVETDQLTHQYTLVISPD---

---PASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLID
NPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVXDSVEXAKDXXEKTFVANQEAEK
KMFDDLEAAKAEXRKKADEKLAAEKAAEKEAEEADEEEEEVA*edlvkt*xkkkksknqp
kk


Translated Amino Acid sequence (All Frames)
Frame A:
tvglleflqciifiiisflfnkkeript*dfycv*fs*flfsilhyqqfiskiplitign
qdgllvigikkmvnqvn*filqvnglvmkikkvfklvkmlvstlyqlnsqvsvtkvki*f
sntl*rmnkklivvvhtssyyhpn*inqhsmvnlniplclvqmfvvpqreftsfsttker
ti*srkkstklkpin*lintlwsfhqi---

---sqlqsliqklsnqrigmkkttvngkpqpspiqntkvngkqrksqiqntkvngyth*l
itqntlktmnstslmisvlsvsnygklnlvpslti*ssptlsxklkixxkrpllptkkpk
rkclttskppklxrerkltkn*lpkkllkkkpkklmkkkkkslkki*lklxqkrrsqkin
qks

Frame B:
llaywnfsnasyl*lylfclikkkeyqhetfivfnflsfcfqfciinssfqryl**rlgi
kmgc**la*rrw*ir*issycr*mvw**kskrysn**rcsflrcis*ipkfq*qr*rfss
pihcke*tks*lwwfihqvitiqirsisirw*i*ifhyvwsrclwclkessrhsqlqrke
pfnqernqqs*nrsinssihfghftr---

---psfnr*srscqtrgle*rrrr*mgspnhrqsriqr*meskenpksriqr*mgtpin*
*prir*rq*tlpl**srcyrfrimas*iwfhl*qydrxrlcrxs*rfx*kdlccqprsrk
env*rprsrqs*xekes*rkiscrksc*krsrrs**rrrrsrlrrfs*nlxkkeevkkst
kk

Frame C:
cwptgispmhhiynyiffv**KRKNTNMRLLLCLIFLVFVFNFALSTVHFKDTFDNDWES
RWVVSDWHKEDGKSGKLVHTAGKWFGDENQKGIQTSEDARFYAVSAKFPSFSNKGKDLVL
QYTVKNEQKVDCGGSYIKLLPSKLDQSAFDGESEYSIMFGPDVCGASKRVHVILNYKGKN
HLIKKEINKVETDQLTHQYTLVISPD---

---PASIVDPEAVKPEDWNEEDDGEWEAPTIANPEYKGEWKAKKIPNPEYKGEWVHPLID
NPEYAEDNELYLFNDLGAIGFELWQVKSGSIFNNMIVXDSVEXAKDXXEKTFVANQEAEK
KMFDDLEAAKAEXRKKADEKLAAEKAAEKEAEEADEEEEEVA*edlvkt*xkkkksknqp
kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFK274 (AFK274Q) /CSM/AF/AFK2-D/AFK274Q.Seq.d/ 1941 0.0
VFL214 (VFL214Q) /CSM/VF/VFL2-A/VFL214Q.Seq.d/ 1215 0.0
AFI321 (AFI321Q) /CSM/AF/AFI3-A/AFI321Q.Seq.d/ 1189 0.0
VFM435 (VFM435Q) /CSM/VF/VFM4-B/VFM435Q.Seq.d/ 1183 0.0
VFH220 (VFH220Q) /CSM/VF/VFH2-A/VFH220Q.Seq.d/ 1183 0.0
VFH144 (VFH144Q) /CSM/VF/VFH1-B/VFH144Q.Seq.d/ 1183 0.0
VFH121 (VFH121Q) /CSM/VF/VFH1-A/VFH121Q.Seq.d/ 1183 0.0
SFJ801 (SFJ801Q) /CSM/SF/SFJ8-A/SFJ801Q.Seq.d/ 1183 0.0
SFI741 (SFI741Q) /CSM/SF/SFI7-B/SFI741Q.Seq.d/ 1183 0.0
AFO559 (AFO559Q) /CSM/AF/AFO5-C/AFO559Q.Seq.d/ 1183 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U36937|U36937.1 Dictyostelium discoideum calreticulin mRNA, complete cds. 1156 0.0 2
BD248385|BD248385.1 Gene participating in tolerance against environmental stress. 92 9e-24 3
BH160872|BH160872.1 ENTRI18TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 1e-17 3
BI921109|BI921109.1 EST541012 tomato callus Lycopersicon esculentum cDNA clone cLEC72A21 5' end, mRNA sequence. 74 7e-11 2
AZ543757|AZ543757.1 ENTGD24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 80 7e-11 1
AI782264|AI782264.1 EST263143 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES18L5, mRNA sequence. 74 4e-09 1
AI489195|AI489195.1 EST247534 tomato ovary, TAMU Lycopersicon esculentum cDNA clone cLED17D1, mRNA sequence. 74 4e-09 1
AW649196|AW649196.1 EST327650 tomato germinating seedlings, TAMU Lycopersicon esculentum cDNA clone cLEI7M10 5', mRNA sequence. 74 4e-09 1
AW626316|AW626316.1 EST320223 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ19K24 5', mRNA sequence. 74 4e-09 1
BE459798|BE459798.1 EST415090 tomato developing/immature green fruit Lycopersicon esculentum cDNA clone cLEM8G13, mRNA sequence. 74 4e-09 1
dna update 2003. 9. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U36937_1(U36937|pid:none) Dictyostelium discoideum calreticulin ... 340 4e-92
L24159_1(L24159|pid:none) Schistosoma mansoni calreticulin gene,... 152 2e-64
AC133339_28(AC133339|pid:none) Oryza sativa chromosome 3 BAC OSJ... 216 1e-54
U27698_1(U27698|pid:none) Arabidopsis thaliana calreticulin (AtC... 213 1e-53
(Q40401) RecName: Full=Calreticulin; Flags: Precursor; &T16968(... 213 1e-53
AB196794_1(AB196794|pid:none) Glycine max Gm crt-1 mRNA for calr... 211 4e-53
AY836753_1(AY836753|pid:none) Triticum aestivum calreticulin-lik... 211 5e-53
EF085019_1(EF085019|pid:none) Picea sitchensis clone WS0297_I16 ... 211 5e-53
EU984501_1(EU984501|pid:none) Nicotiana tabacum calreticulin mRN... 211 5e-53
AY086745_1(AY086745|pid:none) Arabidopsis thaliana clone 27210 m... 210 8e-53
protein update 2009. 4.24
PSORT

psg: 1.01 gvh: 0.69 alm: 0.47 top: 0.10 tms: 0.00 mit: 0.40 mip: 0.03
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: vacuolar
12.0 %: endoplasmic reticulum
8.0 %: nuclear
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for AFK274 is exc

5' end seq. ID AFK274F
5' end seq.
>AFK274F.Seq
ACTGTTGGCCTACTGGAATTTCTCCAATGCATCATATTTATAATTATATCTTTTTTGTTT
AATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTG
TTTTCAATTTTGCATTATCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAAT
CAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATA
CTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTC
GTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTC
TCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTAT
TACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTG
GTCCAGATGTTTGTGGTGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGA
ACCATTTAATCAAGAAAGAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACA
CTTTGGTCATTTCACCAGATA----------
Length of 5' end seq. 621
3' end seq. ID AFK274Z
3' end seq.
>AFK274Z.Seq
----------TCCCAGCTTCAATCGTTGATCCAGAAGCTGTCAAACCAGAGGATTGGAAT
GAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCCAATCCAGAATACAAAGGTGAA
TGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGTGAATGGGTACACCCATTAATT
GATAACCCAGAATACGCTGAAGACAATGAACTCTACCTCTTTAATGATCTCGGTGCTATC
GGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTTAACAATATGATCGTCNCCGAC
TCTGTCGAANAAGCTAAAGATTTNTNTGAAAAGACCTTTGTTGCCAACCAAGAAGCCGAA
AAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAANAGAGAAAGAAAGCTGACGAA
AAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAAGAAGCTGATGAAGAAGAAGAA
GAAGTCGCTTAAGAAGATTTAGTTAAAACTTAGNCAAAAAAGAAGAAGTCAAAAAATCAA
CCAAAAAAGT
Length of 3' end seq. 540
Connected seq. ID AFK274P
Connected seq.
>AFK274P.Seq
ACTGTTGGCCTACTGGAATTTCTCCAATGCATCATATTTATAATTATATCTTTTTTGTTT
AATAAAAAAGAAAGAATACCAACATGAGACTTTTATTGTGTTTAATTTTCTTAGTTTTTG
TTTTCAATTTTGCATTATCAACAGTTCATTTCAAAGATACCTTTGATAACGATTGGGAAT
CAAGATGGGTTGTTAGTGATTGGCATAAAGAAGATGGTAAATCAGGTAAATTAGTTCATA
CTGCAGGTAAATGGTTTGGTGATGAAAATCAAAAAGGTATTCAAACTAGTGAAGATGCTC
GTTTCTACGCTGTATCAGCTAAATTCCCAAGTTTCAGTAACAAAGGTAAAGATTTAGTTC
TCCAATACACTGTAAAGAATGAACAAAAAGTTGATTGTGGTGGTTCATACATCAAGTTAT
TACCATCCAAATTAGATCAATCAGCATTCGATGGTGAATCTGAATATTCCATTATGTTTG
GTCCAGATGTTTGTGGTGCCTCAAAGAGAGTTCACGTCATTCTCAACTACAAAGGAAAGA
ACCATTTAATCAAGAAAGAAATCAACAAAGTTGAAACCGATCAATTAACTCATCAATACA
CTTTGGTCATTTCACCAGATA----------TCCCAGCTTCAATCGTTGATCCAGAAGCT
GTCAAACCAGAGGATTGGAATGAAGAAGACGACGGTGAATGGGAAGCCCCAACCATCGCC
AATCCAGAATACAAAGGTGAATGGAAAGCAAAGAAAATCCCAAATCCAGAATACAAAGGT
GAATGGGTACACCCATTAATTGATAACCCAGAATACGCTGAAGACAATGAACTCTACCTC
TTTAATGATCTCGGTGCTATCGGTTTCGAATTATGGCAAGTTAAATCTGGTTCCATCTTT
AACAATATGATCGTCNCCGACTCTGTCGAANAAGCTAAAGATTTNTNTGAAAAGACCTTT
GTTGCCAACCAAGAAGCCGAAAAGAAAATGTTTGACGACCTCGAAGCCGCCAAAGCTGAA
NAGAGAAAGAAAGCTGACGAAAAATTAGCTGCCGAAAAAGCTGCTGAAAAAGAAGCCGAA
GAAGCTGATGAAGAAGAAGAAGAAGTCGCTTAAGAAGATTTAGTTAAAACTTAGNCAAAA
AAGAAGAAGTCAAAAAATCAACCAAAAAAGT
Length of connected seq. 1161
Full length Seq ID -
Full length Seq. -
Length of full length seq. -