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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD508
Library SL
(Link to library)
Clone ID SLD508
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13482-1
Original site URL
Representative seq. ID SLD508P
(Link to Original site)
Representative DNA sequence 
>SLD508 (SLD508Q) /CSM/SL/SLD5-A/SLD508Q.Seq.d/
AAAAATAATGATCAGATCAGCAAGACTCATTTCAAATATTAAATTTGGACAAAAAAATAT
TAGACAATTCTCAACCAATACAAATTGGTGGGCAAATGTTCAAAAGGGACCAGAAGATCC
AATTTTAGGTGTTAGCATTGCTTACAATAAAGATACCTCACCATCAAAXXXXXXXXXXCA
TGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTTTTGTTTCACTGG
TTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTATTTAACTCGTAA
TGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATCTCGCTAAAGCAAT
GGCTGCCGTTACAAAAGATAATT
sequence update 1999. 2.23
Translated Amino Acid sequence 
KIMIRSARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPS---

---HGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYL
AKAMAAVTKDN
Translated Amino Acid sequence (All Frames) 
Frame A:
knndqiskthfky*iwtkky*tilnqyklvgkcskgtrrsnfrc*hclq*ryltik---

---HGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIYLTRNGRISIAGINSTNVEYL
AKAMAAVTKDN

Frame B:
KIMIRSARLISNIKFGQKNIRQFSTNTNWWANVQKGPEDPILGVSIAYNKDTSPS---

---mvqlviglilplklvcfvslv*lqnklivwqmnitsi*lvmvvsqllvliqqmlnis
lkqwlplqkii

Frame C:
k**sdqqdsfqilnldkkildnsqpiqiggqmfkrdqkiqf*vlalltikiphhq---

---wfns*lvsyyhsnwyvlfhwfnsrts*sfgk*ishlfns*wsylncwy*fnkc*isr
*sngcrykr*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLD508 (SLD508Q) /CSM/SL/SLD5-A/SLD508Q.Seq.d/                        658   0.0
VSH203 (VSH203Q) /CSM/VS/VSH2-A/VSH203Q.Seq.d/                        406   e-113
SLK866 (SLK866Q) /CSM/SL/SLK8-C/SLK866Q.Seq.d/                        406   e-113
SLI866 (SLI866Q) /CSM/SL/SLI8-C/SLI866Q.Seq.d/                        406   e-113
SLE772 (SLE772Q) /CSM/SL/SLE7-C/SLE772Q.Seq.d/                        406   e-113
SLE757 (SLE757Q) /CSM/SL/SLE7-C/SLE757Q.Seq.d/                        406   e-113
SLB133 (SLB133Q) /CSM/SL/SLB1-B/SLB133Q.Seq.d/                        406   e-113
VFE757 (VFE757Q) /CSM/VF/VFE7-C/VFE757Q.Seq.d/                        359   2e-98
AFM850 (AFM850Q) /CSM/AF/AFM8-C/AFM850Q.Seq.d/                        359   2e-98
VSI466 (VSI466Q) /CSM/VS/VSI4-C/VSI466Q.Seq.d/                        347   8e-95
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

C34326|C34326.1 C.elegans cDNA clone yk399d7 : 3' end, single read.    62   3e-07  2
CB407107|CB407107.1 OSTR084D6_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    62   5e-07  2
AF003140|AF003140.2 Caenorhabditis elegans cosmid C44E4.    62   1e-06  3
AC006710|AC006710.1 Caenorhabditis elegans clone Y119C1AA, WORKING DRAFT SEQUENCE, 1 unordered pieces.    62   3e-06  5
CK292432|CK292432.1 EST755146 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMC937 3' end, mRNA sequence.    56   4e-04  1
CK284570|CK284570.1 EST747292 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMAO95 3' end, mRNA sequence.    56   4e-04  1
CK284891|CK284891.1 EST747613 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMAR15 3' end, mRNA sequence.    56   4e-04  1
CK284416|CK284416.1 EST747138 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMAN80 3' end, mRNA sequence.    56   4e-04  1
CK282405|CK282405.1 EST745127 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMAC73 3' end, mRNA sequence.    56   4e-04  1
CK282406|CK282406.1 EST745128 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana benthamiana cDNA clone NBMAC73 3' end, mRNA sequence.    56   4e-04  1
dna update 2004. 3. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55F21) RecName: Full=Aspartate aminotransferase, mitochondrial...   147   9e-35
BT033749_1(BT033749|pid:none) Zea mays full-length cDNA clone ZM...   107   2e-22
BT054043_1(BT054043|pid:none) Zea mays full-length cDNA clone ZM...   107   2e-22
BT055178_1(BT055178|pid:none) Zea mays full-length cDNA clone ZM...   107   2e-22
D25323_1(D25323|pid:none) Panicum miliaceum gene for mitochondri...   105   5e-22
S22377(S22377;S40066;S18890) aspartate transaminase (EC 2.6.1.1)...   105   5e-22
AK070560_1(AK070560|pid:none) Oryza sativa Japonica Group cDNA c...   105   6e-22
BC054684_1(BC054684|pid:none) Danio rerio glutamic-oxaloacetic t...   103   2e-21
GN122138_1(GN122138|pid:none) Sequence 5034 from Patent WO200903...   103   2e-21
AP004731_14(AP004731|pid:none) Oryza sativa Japonica Group genom...   102   3e-21
protein update 2009. 6. 2
PSORT 

 psg: 0.76  gvh: 0.30  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.48  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: cytoplasmic

>> prediction for SLD508 is mit
5' end seq. ID SLD508F
5' end seq. 
>SLD508F.Seq
AAAAATAATGATCAGATCAGCAAGACTCATTTCAAATATTAAATTTGGACAAAAAAATAT
TAGACAATTCTCAACCAATACAAATTGGTGGGCAAATGTTCAAAAGGGACCAGAAGATCC
AATTTTAGGTGTTAGCATTGCTTACAATAAAGATACCTCACCATCAAA----------
Length of 5' end seq. 168
3' end seq. ID SLD508Z
3' end seq. 
>SLD508Z.Seq
----------CATGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTT
TTGTTTCACTGGTTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTA
TTTAACTCGTAATGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATCT
CGCTAAAGCAATGGCTGCCGTTACAAAAGATAATT
Length of 3' end seq. 205
Connected seq. ID SLD508P
Connected seq. 
>SLD508P.Seq
AAAAATAATGATCAGATCAGCAAGACTCATTTCAAATATTAAATTTGGACAAAAAAATAT
TAGACAATTCTCAACCAATACAAATTGGTGGGCAAATGTTCAAAAGGGACCAGAAGATCC
AATTTTAGGTGTTAGCATTGCTTACAATAAAGATACCTCACCATCAAA----------CA
TGGTTCAACTCGTGATTGGTCTCATATTACCACTCAAATTGGTATGTTTTGTTTCACTGG
TTTAACTCCAGAACAAGTTGATCGTTTGGCAAATGAATATCACATCTATTTAACTCGTAA
TGGTCGTATCTCAATTGCTGGTATTAATTCAACAAATGTTGAATATCTCGCTAAAGCAAT
GGCTGCCGTTACAAAAGATAATT
Length of connected seq. 373
Full length Seq ID -
Full length Seq. -
Length of full length seq. -