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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD507
Library SL
(Link to library)
Clone ID SLD507
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13413-1
Original site URL
Representative seq. ID SLD507Z
(Link to Original site)
Representative DNA sequence 
>SLD507 (SLD507Q) /CSM/SL/SLD5-A/SLD507Q.Seq.d/
XXXXXXXXXXGAACAGATACCCCATACTCTGATCGTGATTATGTTCTTAAAATTATTGAT
TTGGATAAAGATGGATGTGTTTCCGCAAATGAATTACAAGAATGGTTCAAAAAAAAAAGA
ATTGATTATGCAAGCCGTCCACATTGTTAAAAAACTTGGGACATAATACCACATTAATCT
TTTTTTTAAGGTTTGGTACATAAAAAAAAAAAAATTAAATAAATATTCAATTTCCATTAA
AAAAAAAA
sequence update 1998. 5.15
Translated Amino Acid sequence 
---QIPHTLIVIMFLKLLIWIKMDVFPQMNYKNGSKKKELIMQAVHIVKKLGT*yhinlf
fkvwyikkkklnkysisikkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---nrypil*s*lcs*ny*fg*rwmcfrk*itrmvqkkkn*lckpstllknlghnttlif
flrfgt*kkkn*iniqfplkkk


Frame B:
---tdtpysdrdyvlkiidldkdgcvsanelqewfkkkridyasrphc*ktwdiiph*sf
f*glvhkkkkik*ifnfh*kk


Frame C:
---QIPHTLIVIMFLKLLIWIKMDVFPQMNYKNGSKKKELIMQAVHIVKKLGT*yhinlf
fkvwyikkkklnkysisikkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI132 (SSI132Q) /CSM/SS/SSI1-B/SSI132Q.Seq.d/                        319   1e-86
SSD410 (SSD410Q) /CSM/SS/SSD4-A/SSD410Q.Seq.d/                        319   1e-86
SLF816 (SLF816Q) /CSM/SL/SLF8-A/SLF816Q.Seq.d/                        319   1e-86
SLD566 (SLD566Q) /CSM/SL/SLD5-C/SLD566Q.Seq.d/                        319   1e-86
SLD507 (SLD507Q) /CSM/SL/SLD5-A/SLD507Q.Seq.d/                        319   1e-86
SLD326 (SLD326Q) /CSM/SL/SLD3-B/SLD326Q.Seq.d/                        319   1e-86
SLC556 (SLC556Q) /CSM/SL/SLC5-C/SLC556Q.Seq.d/                        319   1e-86
SLB530 (SLB530Q) /CSM/SL/SLB5-B/SLB530Q.Seq.d/                        319   1e-86
SLB516 (SLB516Q) /CSM/SL/SLB5-A/SLB516Q.Seq.d/                        319   1e-86
SLB493 (SLB493Q) /CSM/SL/SLB4-D/SLB493Q.Seq.d/                        319   1e-86
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92092) Dictyostelium discoideum slug cDNA, clone SSD410.        192   4e-78  3
(AU033831) Dictyostelium discoideum slug cDNA, clone SLB493.      192   4e-78  3
(AF076972) Dictyostelium discoideum calcium-binding protein ...   192   4e-78  3
(AU033775) Dictyostelium discoideum slug cDNA, clone SLB425.      192   4e-78  3
(AU060745) Dictyostelium discoideum slug cDNA, clone SLB331.      192   4e-78  3
(AU034308) Dictyostelium discoideum slug cDNA, clone SLC556.      192   4e-78  3
(AU033479) Dictyostelium discoideum slug cDNA, clone SLA876.      192   4e-78  3
(AU040087) Dictyostelium discoideum slug cDNA, clone SLA389.      192   4e-78  3
(C90136) Dictyostelium discoideum slug cDNA, clone SSI132.        192   4e-78  3
(AU052443) Dictyostelium discoideum slug cDNA, clone SLD326.      192   4e-78  3
dna update 2009. 3.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QT7) RecName: Full=Calcium-binding protein C; AltName: Full=...   100   2e-20
(Q54QT9) RecName: Full=Calcium-binding protein F; AltName: Full=...    79   4e-14
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ...    76   3e-13
BT025932_1(BT025932|pid:none) Drosophila melanogaster IP13252 fu...    35   0.62
AE013599_1522(AE013599|pid:none) Drosophila melanogaster chromos...    35   0.62
AE017198_1461(AE017198|pid:none) Lactobacillus johnsonii NCC 533...    32   5.3
AP006628_453(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    32   5.3
protein update 2009. 6. 2
PSORT 

 psg: 0.99  gvh: 0.45  alm: 0.27  top: 0.50  tms: 0.07  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	 12.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system

>> prediction for SLD507 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SLD507Z
3' end seq. 
>SLD507Z.Seq
----------GAACAGATACCCCATACTCTGATCGTGATTATGTTCTTAAAATTATTGAT
TTGGATAAAGATGGATGTGTTTCCGCAAATGAATTACAAGAATGGTTCAAAAAAAAAAGA
ATTGATTATGCAAGCCGTCCACATTGTTAAAAAACTTGGGACATAATACCACATTAATCT
TTTTTTTAAGGTTTGGTACATAAAAAAAAAAAAATTAAATAAATATTCAATTTCCATTAA
AAAAAAAA
Length of 3' end seq. 238
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -