SLD505
Library SL
(Link to library)
Clone ID SLD505
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14396-1
Original site URL
Representative seq. ID SLD505E
(Link to Original site)
Representative DNA sequence
>SLD505 (SLD505Q) /CSM/SL/SLD5-A/SLD505Q.Seq.d/
CCCAGATACAGTCACATTTTTCAGTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTA
TGTAGAAGATTACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCC
ATGGGCTTCAAAGCTAACAAAAGAAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGA
TAAATCAAATTAAATAATTTTTAAAAAAATTATTAATAAAGTTTTTTTTAACTAAAGTTT
TTAT
sequence update 1998. 5.14
Translated Amino Acid sequence
PDTVTFFSMAIEVCDATASYVEDYLDEACGAFLPGCFWCPWASKLTKEIKV*elnqishd
ksn*iifkkiinkvffn*sfy


Translated Amino Acid sequence (All Frames)
Frame A:
pryshifqygh*sl*cys*lcrrlp**glwcfpprlllvsmgfkankrn*slrvksn*p*
*iklnnf*kny**sff*lkfl


Frame B:
PDTVTFFSMAIEVCDATASYVEDYLDEACGAFLPGCFWCPWASKLTKEIKV*elnqishd
ksn*iifkkiinkvffn*sfy


Frame C:
qiqshfsvwplkfvmlqlvm*kitlmrpvvlssqvasgvhglqs*qkklkfks*iklami
nqik*flkkllikffltkvf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM564 (SSM564Q) /CSM/SS/SSM5-C/SSM564Q.Seq.d/ 400 e-111
SSM346 (SSM346Q) /CSM/SS/SSM3-B/SSM346Q.Seq.d/ 400 e-111
SSL652 (SSL652Q) /CSM/SS/SSL6-C/SSL652Q.Seq.d/ 400 e-111
SSK525 (SSK525Q) /CSM/SS/SSK5-B/SSK525Q.Seq.d/ 400 e-111
SSK104 (SSK104Q) /CSM/SS/SSK1-A/SSK104Q.Seq.d/ 400 e-111
SSJ895 (SSJ895Q) /CSM/SS/SSJ8-D/SSJ895Q.Seq.d/ 400 e-111
SSJ473 (SSJ473Q) /CSM/SS/SSJ4-D/SSJ473Q.Seq.d/ 400 e-111
SSJ289 (SSJ289Q) /CSM/SS/SSJ2-D/SSJ289Q.Seq.d/ 400 e-111
SSJ231 (SSJ231Q) /CSM/SS/SSJ2-B/SSJ231Q.Seq.d/ 400 e-111
SSI384 (SSI384Q) /CSM/SS/SSI3-D/SSI384Q.Seq.d/ 400 e-111

own update 2001. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU052547) Dictyostelium discoideum slug cDNA, clone SLD505. 400 e-111 3
(C93728) Dictyostelium discoideum slug cDNA, clone SSL652. 400 e-110 3
(C94128) Dictyostelium discoideum slug cDNA, clone SSG442. 400 e-110 3
(C90904) Dictyostelium discoideum slug cDNA, clone SSJ289. 400 e-110 3
(C90854) Dictyostelium discoideum slug cDNA, clone SSJ231. 400 e-110 2
(C90321) Dictyostelium discoideum slug cDNA, clone SSI204. 400 e-110 2
(C94197) Dictyostelium discoideum slug cDNA, clone SSK525. 400 e-110 2
(BJ391729) Dictyostelium discoideum cDNA clone:dds24p23, 5' ... 400 e-110 2
(BJ368150) Dictyostelium discoideum cDNA clone:ddc45b13, 5' ... 400 e-110 2
(BJ392407) Dictyostelium discoideum cDNA clone:dds27d18, 5' ... 400 e-110 2
dna update 2009. 3.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF140044_1(AF140044|pid:none) Dictyostelium discoideum putative ... 103 3e-21
CP000113_2102(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 78 9e-14
CP000155_1080(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 76 3e-13
AC115604_1(AC115604|pid:none) Dictyostelium discoideum chromosom... 45 8e-04

protein update 2009. 3. 4
PSORT

psg: 0.75 gvh: 0.54 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: nuclear
20.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for SLD505 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SLD505E
Full length Seq.
>SLD505E.Seq
CCCAGATACAGTCACATTTTTCAGTATGGCCATTGAAGTTTGTGATGCTACAGCTAGTTA
TGTAGAAGATTACCTTGATGAGGCCTGTGGTGCTTTCCTCCCAGGTTGCTTCTGGTGTCC
ATGGGCTTCAAAGCTAACAAAAGAAATTAAAGTTTAAGAGTTAAATCAAATTAGCCATGA
TAAATCAAATTAAATAATTTTTAAAAAAATTATTAATAAAGTTTTTTTTAACTAAAGTTT
TTAT
Length of full length seq. 244