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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD503
Library SL
(Link to library)
Clone ID SLD503
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U12148-1
Original site URL
Representative seq. ID SLD503P
(Link to Original site)
Representative DNA sequence 
>SLD503 (SLD503Q) /CSM/SL/SLD5-A/SLD503Q.Seq.d/
CTCATAAAAAAAAAAATTAATAATAATAATAATATTTTAAAAAATAATATCAAAAAAGTA
AGAAAAAAAAAAAAAAAAAAAATTAAAAAATGAATANAAAATCTTTAAGGAAAAAGAACA
TACAAAATATGGATCAAGAAGAAGTTTATAATAGAATTAAAGAGAATGTAGCACATATGG
ATGAAATTCAAAGGACAATGGAAAAACAACAACAAACATTTTTCCAAATGTCATTANAAA
GTAAACAGATTGCGGAATCAATGAAAAAATATTCAATGGATGCAGCATACTTTAATTCXX
XXXXXXXXAAAAACAACAACAACAACAACAACAGCAAACAAATGATGGTGGTGGTAGTGG
TATAAGTAGTAATACAAATACAAGTATCAGTGGTGATAATAGTGAAAATGGTGATAGTTT
AAATAGTAGTACTAGTAATCAAAGTCCTTTAAATTCTTCAATTTTAACTCAACTTTCAAA
TCAATAATCTTTTTTAAAATATAATATTAAAATTGTAAAATCATTTAAAAGAAATAAATA
AAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
hkkkn*****yfkk*yqkskkkkkkkn*KMNXKSLRKKNIQNMDQEEVYNRIKENVAHMD
EIQRTMEKQQQTFFQMSLXSKQIAESMKKYSMDAAYFN---

---KQQQQQQQQTNDGGGSGISSNTNTSISGDNSENGDSLNSSTSNQSPLNSSILTQLSN
Q*sflkynikivksfkrnk*
Translated Amino Acid sequence (All Frames) 
Frame A:
likkkinnnnnilknnikkvrkkkkkkikk*ixnl*gkrtykiwikkkfiielkrm*hiw
mkfkgqwknnnkhfskchxkvnrlrnq*kniqwmqhtli---

---knnnnnnnskqmmvvvvv*vviqiqvsvviivkmviv*ivvlvikvl*ilqf*lnfq
innlf*niilkl*nhlkeink

Frame B:
s*kkkliiiiif*kiiskk*ekkkkkklknexkifkekehtkygsrrsl**n*recstyg
*nskdngktttnifpnvixk*tdcginekifngcsil*f---

---ktttttttank*www*wyk**ykykyqw****kw**fk**y**sksfkffnfnstfk
siiffki*y*nckii*kk*ik

Frame C:
hkkkn*****yfkk*yqkskkkkkkkn*KMNXKSLRKKNIQNMDQEEVYNRIKENVAHMD
EIQRTMEKQQQTFFQMSLXSKQIAESMKKYSMDAAYFN---

---KQQQQQQQQTNDGGGSGISSNTNTSISGDNSENGDSLNSSTSNQSPLNSSILTQLSN
Q*sflkynikivksfkrnk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM675 (SSM675Q) /CSM/SS/SSM6-D/SSM675Q.Seq.d/                        400   e-111
SLD503 (SLD503Q) /CSM/SL/SLD5-A/SLD503Q.Seq.d/                        400   e-111
SLF745 (SLF745Q) /CSM/SL/SLF7-B/SLF745Q.Seq.d/                        305   4e-82
SLF592 (SLF592Q) /CSM/SL/SLF5-D/SLF592Q.Seq.d/                        305   4e-82
SLC682 (SLC682Q) /CSM/SL/SLC6-D/SLC682Q.Seq.d/                        305   4e-82
SLC290 (SLC290Q) /CSM/SL/SLC2-D/SLC290Q.Seq.d/                        305   4e-82
AHB494 (AHB494Q) /CSM/AH/AHB4-D/AHB494Q.Seq.d/                        305   4e-82
SLF606 (SLF606Q) /CSM/SL/SLF6-A/SLF606Q.Seq.d/                        297   9e-80
SLE791 (SLE791Q) /CSM/SL/SLE7-D/SLE791Q.Seq.d/                        276   3e-73
SLD857 (SLD857Q) /CSM/SL/SLD8-C/SLD857Q.Seq.d/                        218   7e-56
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...   331   e-157  2
(AU061187) Dictyostelium discoideum slug cDNA, clone SLD503.      331   2e-86  1
(AU039585) Dictyostelium discoideum slug cDNA, clone SLE791.      270   9e-70  2
(AU034322) Dictyostelium discoideum slug cDNA, clone SLC682.      270   9e-70  2
(BJ348654) Dictyostelium discoideum cDNA clone:dda33l24, 3' ...   270   9e-70  2
(AU061759) Dictyostelium discoideum slug cDNA, clone SLF745.      270   1e-69  2
(BJ331107) Dictyostelium discoideum cDNA clone:dda33l24, 5' ...   270   1e-69  2
(AU034227) Dictyostelium discoideum slug cDNA, clone SLC290.      270   2e-69  2
(AU052545) Dictyostelium discoideum slug cDNA, clone SLD503.      270   3e-69  2
(AU053119) Dictyostelium discoideum slug cDNA, clone SLF745.      270   2e-68  2
dna update 2009. 3.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_32(AC116305|pid:none) Dictyostelium discoideum chromoso...   113   4e-24
protein update 2009. 1.22
PSORT 

 psg: 0.46  gvh: 0.36  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for SLD503 is nuc
5' end seq. ID SLD503F
5' end seq. 
>SLD503F.Seq
CTCATAAAAAAAAAAATTAATAATAATAATAATATTTTAAAAAATAATATCAAAAAAGTA
AGAAAAAAAAAAAAAAAAAAAATTAAAAAATGAATANAAAATCTTTAAGGAAAAAGAACA
TACAAAATATGGATCAAGAAGAAGTTTATAATAGAATTAAAGAGAATGTAGCACATATGG
ATGAAATTCAAAGGACAATGGAAAAACAACAACAAACATTTTTCCAAATGTCATTANAAA
GTAAACAGATTGCGGAATCAATGAAAAAATATTCAATGGATGCAGCATACTTTAATTC--
--------
Length of 5' end seq. 298
3' end seq. ID SLD503Z
3' end seq. 
>SLD503Z.Seq
----------AAAAACAACAACAACAACAACAACAGCAAACAAATGATGGTGGTGGTAGT
GGTATAAGTAGTAATACAAATACAAGTATCAGTGGTGATAATAGTGAAAATGGTGATAGT
TTAAATAGTAGTACTAGTAATCAAAGTCCTTTAAATTCTTCAATTTTAACTCAACTTTCA
AATCAATAATCTTTTTTAAAATATAATATTAAAATTGTAAAATCATTTAAAAGAAATAAA
TAAAA
Length of 3' end seq. 235
Connected seq. ID SLD503P
Connected seq. 
>SLD503P.Seq
CTCATAAAAAAAAAAATTAATAATAATAATAATATTTTAAAAAATAATATCAAAAAAGTA
AGAAAAAAAAAAAAAAAAAAAATTAAAAAATGAATANAAAATCTTTAAGGAAAAAGAACA
TACAAAATATGGATCAAGAAGAAGTTTATAATAGAATTAAAGAGAATGTAGCACATATGG
ATGAAATTCAAAGGACAATGGAAAAACAACAACAAACATTTTTCCAAATGTCATTANAAA
GTAAACAGATTGCGGAATCAATGAAAAAATATTCAATGGATGCAGCATACTTTAATTC--
--------AAAAACAACAACAACAACAACAACAGCAAACAAATGATGGTGGTGGTAGTGG
TATAAGTAGTAATACAAATACAAGTATCAGTGGTGATAATAGTGAAAATGGTGATAGTTT
AAATAGTAGTACTAGTAATCAAAGTCCTTTAAATTCTTCAATTTTAACTCAACTTTCAAA
TCAATAATCTTTTTTAAAATATAATATTAAAATTGTAAAATCATTTAAAAGAAATAAATA
AAA
Length of connected seq. 533
Full length Seq ID -
Full length Seq. -
Length of full length seq. -