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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SLD501
Library SL
(Link to library)
Clone ID SLD501
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16513-1
Original site URL
Representative seq. ID SLD501P
(Link to Original site)
Representative DNA sequence 
>SLD501 (SLD501Q) /CSM/SL/SLD5-A/SLD501Q.Seq.d/
ATTAATTGCATTGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATC
ACCAGACAACTTTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGC
ACCATGGTGTGGCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATT
CGCACCAGTTTCCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAA
AGCTCTCTGTAGTAAATATGATGTTTCTGGTTATCCAAXXXXXXXXXXCTCTCCCAGAAG
AATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATGAAANCCATTGCTGAAAAATCAA
TCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTG
GAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGAATCTTTCAAATCAAAAT
AAATTAAATTTAATTTAGAAAATAAAAAATAAAATAAAAGAAAAAAAATAAAATATAAAA
TAAAATTTTAA
sequence update 1999. 2.23
Translated Amino Acid sequence 
LIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCGHCKKLAPDFEILADTF
APVSNKVVIAKVDCDQADNKALCSKYDVSGYP---

---LPEELRTEGSYYVKVMKXIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNIL
ESFKSK*ikfnlenkk*nkrkkikykikf*
Translated Amino Acid sequence (All Frames) 
Frame A:
incigicclmlsrrkcccfitrql*ysc*wfkncickilctmvwpl*ktctrf*npc*hi
rtsfqqscncqs*l*ps*qqssl**i*cfwls---

---lsqkn*elkvhttsks*xpllknqsil*plkslvspn*slvqclerklmnlprnsif
*nlsnqnklnli*kiknkikekk*nik*nf

Frame B:
LIALAFVALCSAEGNVVVLSPDNFDTVVDGSKTVFVKFYAPWCGHCKKLAPDFEILADTF
APVSNKVVIAKVDCDQADNKALCSKYDVSGYP---

---sprrikn*rfilrqshexhc*kinrfcnh*nrsyhqislwfnvwkes**icqetqyf
rifqikin*i*frk*kik*kkknki*nkil

Frame C:
*lhwhllpyaqqkemllfyhqttliqllmvqklyl*nsmhhgvaivknlhqilksllths
hqfptkl*lpklivtklttklsvvnmmflviq---

---LPEELRTEGSYYVKVMKXIAEKSIDFVTTEIARITKLVSGSMSGKKADEFAKKLNIL
ESFKSK*ikfnlenkk*nkrkkikykikf*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG863 (VSG863Q) /CSM/VS/VSG8-C/VSG863Q.Seq.d/                        551   e-156
VSF163 (VSF163Q) /CSM/VS/VSF1-C/VSF163Q.Seq.d/                        551   e-156
VFO618 (VFO618Q) /CSM/VF/VFO6-A/VFO618Q.Seq.d/                        551   e-156
VFO463 (VFO463Q) /CSM/VF/VFO4-C/VFO463Q.Seq.d/                        551   e-156
VFO402 (VFO402Q) /CSM/VF/VFO4-A/VFO402Q.Seq.d/                        551   e-156
VFO241 (VFO241Q) /CSM/VF/VFO2-B/VFO241Q.Seq.d/                        551   e-156
VFN787 (VFN787Q) /CSM/VF/VFN7-D/VFN787Q.Seq.d/                        551   e-156
VFN729 (VFN729Q) /CSM/VF/VFN7-B/VFN729Q.Seq.d/                        551   e-156
VFN233 (VFN233Q) /CSM/VF/VFN2-B/VFN233Q.Seq.d/                        551   e-156
VFM733 (VFM733Q) /CSM/VF/VFM7-B/VFM733Q.Seq.d/                        551   e-156
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AF019112) Dictyostelium discoideum protein disulfide isomer...   551   0.0    2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   551   0.0    2
(AU266879) Dictyostelium discoideum vegetative cDNA clone:VS...   551   e-153  1
(AU264804) Dictyostelium discoideum vegetative cDNA clone:VS...   551   e-153  1
(AU061185) Dictyostelium discoideum slug cDNA, clone SLD501.      551   e-153  1
(BJ417822) Dictyostelium discoideum cDNA clone:ddv28n21, 5' ...   551   e-153  1
(BJ417666) Dictyostelium discoideum cDNA clone:ddv28j07, 5' ...   551   e-153  1
(BJ417260) Dictyostelium discoideum cDNA clone:ddv30c06, 5' ...   551   e-153  1
(BJ417165) Dictyostelium discoideum cDNA clone:ddv29n16, 5' ...   551   e-153  1
(BJ417047) Dictyostelium discoideum cDNA clone:ddv29a12, 5' ...   551   e-153  1
dna update 2009. 3.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86IA3) RecName: Full=Protein disulfide-isomerase 1;          S...   192   5e-48
AF019112_1(AF019112|pid:none) Dictyostelium discoideum protein d...   192   5e-48
AY730725_1(AY730725|pid:none) Entamoeba histolytica protein disu...   104   1e-21
EF086125_1(EF086125|pid:none) Picea sitchensis clone WS0285_I21 ...    98   2e-19
AB182629_1(AB182629|pid:none) Glycine max Gm pdis-1a mRNA for pr...    97   3e-19
EF145211_1(EF145211|pid:none) Populus trichocarpa clone WS01121_...    96   5e-19
BT051724_1(BT051724|pid:none) Medicago truncatula clone MTYF5_F6...    95   1e-18
AC122168_31(AC122168|pid:none) Medicago truncatula clone mth2-4o...    95   1e-18
BT052025_1(BT052025|pid:none) Medicago truncatula clone MTYF9_FA...    95   1e-18
(O22263) RecName: Full=Probable protein disulfide-isomerase A6; ...    94   3e-18
protein update 2009. 6. 2
PSORT 

 psg: 0.96  gvh: 0.68  alm: 0.45  top: 0.27  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial

>> prediction for SLD501 is exc
5' end seq. ID SLD501F
5' end seq. 
>SLD501F.Seq
ATTAATTGCATTGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATC
ACCAGACAACTTTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGC
ACCATGGTGTGGCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATT
CGCACCAGTTTCCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAA
AGCTCTCTGTAGTAAATATGATGTTTCTGGTTATCCAA----------
Length of 5' end seq. 278
3' end seq. ID SLD501Z
3' end seq. 
>SLD501Z.Seq
----------CTCTCCCAGAAGAATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATG
AAANCCATTGCTGAAAAATCAATCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAA
TTAGTCTCTGGTTCAATGTCTGGAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATT
TTAGAATCTTTCAAATCAAAATAAATTAAATTTAATTTAGAAAATAAAAAATAAAATAAA
AGAAAAAAAATAAAATATAAAATAAAATTTTAA
Length of 3' end seq. 263
Connected seq. ID SLD501P
Connected seq. 
>SLD501P.Seq
ATTAATTGCATTGGCATTTGTTGCCTTATGCTCAGCAGAAGGAAATGTTGTTGTTTTATC
ACCAGACAACTTTGATACAGTTGTTGATGGTTCAAAAACTGTATTTGTAAAATTCTATGC
ACCATGGTGTGGCCATTGTAAAAAACTTGCACCAGATTTTGAAATCCTTGCTGACACATT
CGCACCAGTTTCCAACAAAGTTGTAATTGCCAAAGTTGATTGTGACCAAGCTGACAACAA
AGCTCTCTGTAGTAAATATGATGTTTCTGGTTATCCAA----------CTCTCCCAGAAG
AATTAAGAACTGAAGGTTCATACTACGTCAAAGTCATGAAANCCATTGCTGAAAAATCAA
TCGATTTTGTAACCACTGAAATCGCTCGTATCACCAAATTAGTCTCTGGTTCAATGTCTG
GAAAGAAAGCTGATGAATTTGCCAAGAAACTCAATATTTTAGAATCTTTCAAATCAAAAT
AAATTAAATTTAATTTAGAAAATAAAAAATAAAATAAAAGAAAAAAAATAAAATATAAAA
TAAAATTTTAA
Length of connected seq. 541
Full length Seq ID -
Full length Seq. -
Length of full length seq. -